KEGG   Yarrowia lipolytica: 2910752
Entry
2910752           CDS       T01033                                 
Symbol
YALI2_D00819g
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
yli  Yarrowia lipolytica
Pathway
yli03440  Homologous recombination
yli03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:yli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    2910752 (YALI2_D00819g)
   03450 Non-homologous end-joining
    2910752 (YALI2_D00819g)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yli03032]
    2910752 (YALI2_D00819g)
   03400 DNA repair and recombination proteins [BR:yli03400]
    2910752 (YALI2_D00819g)
DNA replication proteins [BR:yli03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    2910752 (YALI2_D00819g)
DNA repair and recombination proteins [BR:yli03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     2910752 (YALI2_D00819g)
    BRCA1-C complex
     2910752 (YALI2_D00819g)
   NHEJ (non-homologous end-joining)
    MRX complex
     2910752 (YALI2_D00819g)
SSDB
Motif
Pfam: AAA_23 AAA_15 AAA_21 SMC_N SbcC_Walker_B Crescentin AAA_29 Golgin_A5 AAA_13 CENP-Q AAA_22 Rad50_zn_hook ABC_tran AAA_16
Other DBs
NCBI-GeneID: 2910752
NCBI-ProteinID: XP_502852
UniProt: Q6C910 A0A1D8NEN8
LinkDB
Position
D:complement(join(1928784..1932644,1933263..1933280))
AA seq 1292 aa
MSSISKLSIQGIRSFDNTERETITFNKPLTLIVGQNGSGKTTIIECLRYATTGDLPPHSK
GGAFIHDPKICGEKEVLGQVKLAFTNVNGIQMICTRTMQVLVKKNTRQFKTLEGQLMASN
NGERTTVSTRCAELDAQMPLYLGVSKSILDYVIFCHQEESLWPLSEPAVLKKRFDEIFEA
LKFTKALDSIKSLRKEKNVEIKLQTQTTEYLKADKDRADKAAEKANLLLERIEDYKSQAD
ELETKMEMVTKQSDELFQSNQQFQQVLAEVQQLKRDRVVVGEQRERLEKNCTEVLTVSDD
ELQKQVSEFDSRLDDRRETVSGLKQDSEDARKDMEGHRLEYNSAIVEVGQWEAKKQELEN
QINARESLLEEIGKKWNTSDLNELRSDLKSDLERVKKEAEAEEGNQTDKISKLSTALTEK
KGQINHDKASTLSYENEVRRLQDEMDTIPTVEGTIAYEESVIQKLEEKLAGLQGNSQGEE
ARFETEIESCDEQTEVLSKRLEKCNSDLAEFNSKSEKRAEHRMLVSELAKQRGVLRGVED
ALSKQYDEVGVTDEKTYTAKLSSYQNAVEKGQGAVSKSRDSLANLTTRLDILNKESLVKD
ATLSELYETISAVLGEGEDNIDDYESTLENLSNDLEVATQNRESTMFTARYYETAVKLAK
SAQHNCLLCSRKFSDTELTDFLAHVEEKTISLPDTKERADKEYQDIKSDFDNVQGISGEV
REWRNLKESVESVSAQLKKLKKEVVEGQSAFEKEEESLSLLESQLRDLEVLKKAVEDVKR
LKSDVASKEKELTDFEGEYSTLMDFSEESTSDLPSLASSLNSQIKSINQKRQKLVDDREA
LRKQFSSLQGQISDKKLSLSTQKNQLTKKTGLQQQISGLKTKIEECRARIRTVREEIESI
EPKLQSLKNELSEMRVTNGDKMEAISDKLEDVKNDANQLSHMSQQIQQLEELDIASMLTK
TGRRADSAKGEVENLTQRITQLGEDIATQEKALIDLKGHQRNLQDNLEVRRLTNEMSQIE
GRIRELDETKAVRDRDEYQQKSQQLRSQHSAYSSKHAGLLGEMRQMDDQLRNLNVELKSE
FLDVHEKYRKALILLKTTTVANEDLGKYGKALDSAIMQYHSMKMNEINTIIDELWKATYS
GTDIDTILIRSDEDKPGAAKNRSYNYRVVMVKSDAELDMRGRCSAGQKVLAAIIIRLALA
ECFGINCGMIALDEPTTNLDSDNIESLAKGLSNIIDARSSQKNFQLIVITHDEKFLTHMA
ASKHTDHFYRVSRNVRQKSSIEWCPISLIQDS
NT seq 3879 nt   +upstreamnt  +downstreamnt
atgtcttcgatttcgaaactttccattcagggaatccgttctttcgataataccgaacgt
gagaccatcaccttcaacaaaccattgacactcattgttggccaaaatggttctggaaaa
accaccatcatcgaatgtctgcgatacgccactaccggtgaccttcctcctcactccaag
ggaggtgctttcatccacgatccgaaaatctgtggagagaaagaagtgttaggacaagtt
aaactggcattcaccaacgtcaatggcatacaaatgatatgtacacgaacgatgcaggtt
cttgttaagaaaaatactcgtcaattcaagactttggagggacagctgatggccagtaac
aacggagagcgtactactgtgtcgacgcggtgcgcagaactagacgcccagatgccgctc
tatttgggtgtctcgaagagcattctcgattatgtcatcttttgtcatcaggaggagtca
ctctggccgctatccgagccagccgtgttgaagaagcggtttgacgagattttcgaggct
ctcaaattcacaaaggcattggattctatcaaaagtctcagaaaagaaaagaatgtggag
atcaagcttcaaacacaaacgacagagtacctcaaagcagataaggatagggccgataaa
gctgctgagaaggcgaatctgctgctcgagaggattgaggattacaagtcccaggcggac
gagcttgagaccaagatggagatggtgacaaagcagtccgatgagctgtttcagagtaac
cagcagtttcagcaggtgttggcagaagtccagcagctcaagagagatcgagtggtggtt
ggtgaacagagggagaggcttgagaagaactgtaccgaagtgctgacagtttctgatgac
gagttgcagaaacaggtgtctgaattcgactcgcgactagatgaccgacgagagaccgtg
tctggactcaaacaggattccgaagatgctagaaaagacatggagggtcatcgcttagag
tacaactctgccatcgttgaagtgggtcaatgggaggccaagaaacaggagctggagaac
cagattaacgccagagaatctctactcgaggagattggtaagaaatggaacacttcggac
ttgaatgaattgagatctgacctcaaaagtgaccttgaaagggtcaagaaagaagcagaa
gctgaagagggtaatcagaccgacaagatcagcaagctatccactgctttgacggaaaag
aagggacaaatcaaccacgacaaggcttccactctttcctatgaaaatgaggtcaggcgt
ctgcaagatgagatggataccattccgacggtcgaaggaacgatcgcctacgaggaaagc
gtgattcagaaactggaggagaagttggcaggacttcagggtaattcgcaaggggaggag
gcgagatttgaaactgagattgagtcatgcgatgagcagaccgaagtgctcagtaaacgg
ttggagaaatgtaattctgatctagccgagttcaatagcaagtcggagaagcgagctgaa
caccgcatgctggtgtcggagctggctaagcagcggggcgtgttgcggggcgtggaagat
gcgctatccaagcagtatgatgaggtgggcgtcacggacgagaagacttatacagccaag
ctgtcaagttatcagaatgcggtggaaaaggggcagggggctgtatccaagtcacgtgat
tcgctagcaaatctcaccactcgtcttgacatcttaaacaaggaatcacttgtcaaggac
gcaactctcagtgagctttacgaaaccatttctgctgttctaggcgaaggggaggacaac
attgatgactacgaatcgacgctagagaacctctccaatgacctagaggtcgccacccag
aaccgggaatccacaatgttcaccgcgaggtactatgagactgcagtgaagcttgccaag
tcggctcaacacaactgcttactttgctcgcgtaagttctcggacactgaactgactgat
tttcttgcccacgtggaagagaagactatatctcttcccgataccaaagaacgggctgat
aaagaataccaggatatcaagtccgattttgataacgtccagggtatttccggagaggtg
cgggagtggagaaacttgaaggagagcgtggagagtgtgtctgcacagctcaagaagctc
aaaaaggaggtcgttgaaggccaatcggcttttgaaaaggaggaggagtcactgtcgctg
ctggagagtcagctgcgggatttggaggtgctgaagaaggctgttgaagacgtcaagcga
ctaaaaagcgacgtggcttctaaagaaaaggagttgaccgacttcgagggtgaatactcg
accctgatggacttctctgaagaatcaacctctgatctaccttctttggcttcctctttg
aactcgcaaatcaagagtatcaaccagaagcgtcaaaagttggtagatgatagagaggcc
ttgagaaagcagttctcctcccttcaaggccagatatcggacaaaaagttgagtctcagt
acccagaagaaccagctaaccaagaagacagggcttcagcaacaaatttcgggtctgaag
acgaagattgaagaatgtcgagctcgaatcagaacagtccgagaggagattgaatcgatt
gagcctaaacttcagtcactgaagaacgaattgtctgaaatgagggtgactaacggagac
aagatggaggctatttccgacaagctggaggatgtcaagaatgacgccaatcaactgagc
catatgagccagcagatccagcagctggaggagttggacattgcgagtatgctgacaaag
actggaagacgagcagattcagccaagggcgaggtcgagaacctgactcagcgcatcact
cagctgggcgaagacattgccactcaagagaaggccttaattgacttgaagggacatcaa
cgtaatctgcaggacaacttggaggttcgccgactaactaacgagatgagtcagattgag
gggcgtattcgcgaattggacgaaacaaaggctgtccgggatcgagacgaataccaacaa
aagtcccaacagttgcgatcacagcactctgcctattcatctaaacacgctggcctgctt
ggagaaatgaggcagatggatgaccagctgagaaatctcaatgtggagttgaaatctgag
ttcttggatgtccacgagaagtacagaaaggcgttgattcttctgaaaactaccacagtt
gccaacgaggatcttggaaaatacggaaaagcacttgactccgccatcatgcagtaccac
tctatgaagatgaacgagatcaacacgatcattgatgagctgtggaaagccacgtattcc
ggaacagatatcgacacgattttgattcgatcagatgaggacaagcctggagctgcgaag
aacaggtcctacaactatcgagtagttatggtcaagagcgacgcggaactcgatatgaga
gggcgttgttcggcaggtcagaaggtgctggctgccattatcattcgacttgcgctggcc
gagtgttttggaatcaattgtggaatgattgctctcgatgaacctacaaccaaccttgac
agtgacaacatcgagtcgcttgctaagggtctcagtaacattattgatgctcgaagcagt
cagaagaacttccagctgattgtaattacccatgacgaaaagttcctgacccacatggca
gctagcaaacacactgatcatttttacagagtgagcagaaacgtcagacagaagagcagc
atcgagtggtgtcccattagtttgatccaggactcataa

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