Yarrowia lipolytica: 2910959
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Entry
2910959 CDS
T01033
Symbol
YALI2_D00505g
Name
(RefSeq) Regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
yli
Yarrowia lipolytica
Pathway
yli03013
Nucleocytoplasmic transport
yli03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
yli00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
2910959 (YALI2_D00505g)
03015 mRNA surveillance pathway
2910959 (YALI2_D00505g)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yli03019
]
2910959 (YALI2_D00505g)
Enzymes [BR:
yli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
2910959 (YALI2_D00505g)
5.6.2.5 RNA 5'-3' helicase
2910959 (YALI2_D00505g)
Messenger RNA biogenesis [BR:
yli03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
2910959 (YALI2_D00505g)
mRNA cycle factors
Common to processing body (P body) and stress granule
2910959 (YALI2_D00505g)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
UvrD-helicase
ResIII
DEAD
SLFN-g3_helicase
NPHP3_N
PIF1
NAT10_TcmA_helicase
nSTAND3
UvrD_C_2
AAA_25
AAA_22
AAA_16
ATPase
Motif
Other DBs
NCBI-GeneID:
2910959
NCBI-ProteinID:
XP_503209
UniProt:
Q6C803
A0A1D8NFY8
LinkDB
All DBs
Position
D:3151895..3154789
Genome browser
AA seq
964 aa
AA seq
DB search
MSYDKELAGLMDLSGEDSESEFETLSLTSGRESRDYDEFSEYDNGDNIVIGGGKARPAHA
CVYCGESSPASVVRCLTTNKWFCNGKGGSLNSSHIVAHLVKSRNKTVALHPDSEVGSDVL
ECYNCGNENVFVLGFVTAKLENVVVLLCRHCIQRSPSDANWDIREWQTLIEDRQFLPWLV
PIPRRSESRVTMADVIKAEEAWKTNPSLSWEEALLGNQEEQDEEEEIAEVKATYEDAYEY
QRTYGPLVKIEADYDKNMKESQRQSGLTVSWNRALNNNYLCTFYLNLYDLTGTKITVGDE
VKLYFEGSESSSTPRWSGTGIVVKTPDNFSEEVTLEIRKGGDEKQIPTGESHPFALEFVW
NDITYRRMQQALKLFATDDYSVSGYIYHNLLGHDIPETFLDVPLPEQFSISGFNELNVSQ
VNAVKQVLRRPFSLIQGPPGTGKTVVSTTIIYHLANIRRQNPEKGSKILVCAPSNVAVDQ
LAERIASTGIDVLRLTARSRESMSSSVEHLTIQHALRHGDHGFTRLQKLFELKDELGEFS
AADEKEFAKLEKKASEAIIRKAEVICCTCSTAGNFKLQNLTFSAVLIDEVTQASEPECLI
PLVHGCKQVVFVGDHQQLGPVILNSKAANAGLNKSLFERLILIGHVPIRLMVQYRMHPSL
SEFPSNMFYEGSLQNGVTTASRVLKYVDFPWPQPQHPMLFWSNLGQEEISASGTSFLNRT
EAANCERIVTRLFKCGVAPDQIGVVTPYEGQRAYVTQYMVSSGSVDEAMYKGVEVQSVDA
FQGREKDFIILTCVRSSKTGGIGFLSDPRRLNVALTRAKYGLIILGNPHVLARHPLWLHL
ITYFRSKRCLVEGPLSALQPCNIQLPKPRPWRGNNRFDRKEKNTASVAGDDYSVASSNVL
SEINNDADEQFHDGYSSVFTGGGYQVVDTWGQENSGETSISESLSQRLDQISLEDKKSSF
FPMR
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgagttacgacaaagaactggccgggctgatggatctcagcggagaagacagcgaatcc
gagttcgagactttgtcgctgacgtccgggcgcgagtcacgtgactatgacgagttttcc
gagtacgacaatggggataacattgtgattgggggaggcaaggctcgtcctgcccatgcg
tgtgtctactgtggcgagagctctccggcgtcggttgtgcgttgcctgaccaccaacaag
tggttctgcaacggcaagggtggctctttgaactcctcccacattgtcgctcatcttgtc
aagtctcgaaacaagactgtggctcttcatccggactccgaggtcggatcggacgttctg
gaatgctacaattgtggcaacgagaatgtttttgtgcttgggtttgtcactgccaagctg
gaaaacgtggttgtgcttctgtgtcgccactgcatccagcggtcgcccagtgacgccaac
tgggacatccgggagtggcagacgctgatcgaggaccggcaattcttgccgtggctagtg
cccattccgcggcgaagcgagtcacgtgtcaccatggctgatgtgatcaaggccgaggag
gcctggaagacaaacccgtctctttcgtgggaagaggctctcttgggtaaccaggaggag
caggacgaggaggaggagattgccgaggtcaaggccacttatgaagatgcatatgagtac
cagcggacgtatggacctcttgtcaagatcgaagccgactatgacaagaacatgaaggag
tcgcagcgtcagagtggactcacagtcagctggaaccgggccctcaacaacaattacctg
tgcaccttttatctgaatctctacgatttgaccggaaccaaaatcaccgttggcgatgaa
gtcaagttgtattttgaaggttcggagtcctcttctacgcctcgatggagcggcacggga
attgttgtcaagaccccggacaacttttccgaggaagtgacgcttgaaatcagaaaggga
ggcgacgaaaagcaaatccccacaggagaatcgcatccctttgctctggagtttgtctgg
aacgatatcacgtatcgacggatgcagcaggccctcaaactgtttgccacagacgattat
tccgtgtccggttacatctatcacaatctgctgggtcacgacattcccgaaacatttctg
gatgttcctcttcccgagcaattcagtatctcggggttcaacgaactgaacgtgtcccag
gtgaatgcagtcaagcaggtgcttagacgaccattctccttgatccagggacctcccgga
acaggtaaaactgtggtttccaccaccatcatctaccatctcgcaaacattcgacgccag
aacccagagaagggttccaagattctcgtttgtgcaccgtccaacgtggcggtggaccag
ctggctgaacgaatcgcgtctactggaatcgatgtgctgcgactcaccgctagatcacgt
gaatccatgtcttcctctgtcgagcacctgaccattcagcatgctctacgacacggagat
cacgggttcactcgtcttcagaagctgtttgagctcaaggacgaactgggtgagttttct
gctgctgatgagaaagaatttgcaaagctcgagaagaaggcctccgaagccattattcga
aaagccgaggtcatttgttgcacgtgttccaccgcaggaaacttcaagctgcaaaacttg
actttttcggccgttctcatcgacgaagtcacccaggcatcggagcccgaatgtctcatt
cccctggtccacggctgcaaacaggttgtatttgtcggagatcaccagcagctgggaccc
gtcattctcaactccaaggccgccaacgcgggactcaacaaatctctgtttgaacgactc
attctcattggccacgtgcccatccggctaatggtccagtaccgaatgcacccgtctctg
tccgagttcccctccaacatgttctacgagggctcgctgcagaacggtgtcaccactgcc
tcccgtgtgctcaagtacgtcgacttcccctggccccagccgcaacaccccatgctgttc
tggtccaatctcggccaggaggagatttccgcctctggaacgtctttcctgaaccgaacc
gaggccgccaactgcgagcgaatcgtcaccagactgtttaaatgtggcgttgctccggac
cagatcggtgtagtcactccttacgagggccagagagcctacgtgacccagtatatggta
tccagtggctcagtggacgaagccatgtacaagggagttgaggtgcagtctgtggacgct
ttccagggtcgagaaaaagattttatcattctaacctgtgtgcgatcgtccaaaacgggc
ggtattgggttcctgtccgacccccgacgtctcaatgtggctctgacgcgagctaagtac
ggattgatcattcttggtaacccccatgtcctggctcgacatcctctgtggctgcatctc
atcacttacttccgaagtaagcggtgtcttgttgaaggtccgctgtctgctctgcagccg
tgcaatatccaactgcccaagcctcggccctggagaggaaataaccggtttgacaggaag
gaaaagaacaccgcttcggttgccggcgacgattactcagttgcctcctctaacgtactg
tcagagatcaacaacgacgccgacgagcagtttcacgacggctactcgagtgtatttacc
ggagggggctaccaggtggttgatacttggggccaagagaattccggggagacgtcaatc
tcagagtccttgtcgcaaagactggatcagatttccctcgaagataagaagagcagtttc
tttccaatgagatag
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