Yarrowia lipolytica: 2911334
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Entry
2911334 CDS
T01033
Symbol
YALI2_D00823g
Name
(RefSeq) mRNA 3'-end-processing protein YTH1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
yli
Yarrowia lipolytica
Pathway
yli03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
yli00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
2911334 (YALI2_D00823g)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yli03021
]
2911334 (YALI2_D00823g)
03019 Messenger RNA biogenesis [BR:
yli03019
]
2911334 (YALI2_D00823g)
Transcription machinery [BR:
yli03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
2911334 (YALI2_D00823g)
Messenger RNA biogenesis [BR:
yli03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
2911334 (YALI2_D00823g)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
2911334
NCBI-ProteinID:
XP_502840
UniProt:
Q6C922
A0A1D8NEL8
LinkDB
All DBs
Position
D:complement(1895564..1896145)
Genome browser
AA seq
193 aa
AA seq
DB search
MKFETPSRFKFTPYLEREYQFGLDPNRPLCRGFLQFDGCPRGNSCPDKHLAPTFLNKIVC
KHWLRGLCKKGLNCEFLHEYNLQKMPECQFYVKNGFCTQSPDCQYLHIDPASKIPVCFNY
EKGFCKMGPECSRKHIRRMPCELYMTGFCPKGRVCEFAHPKFVGIYDYMIIKPNPKDKAK
DETKQETKEEALQ
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgaaacgccctctcgattcaagttcacgccatatctcgaacgagagtaccaa
ttcggcctagaccccaaccggccattatgtcgagggttccttcagtttgacggatgtcct
cgaggcaactcttgtcctgacaagcatctggctcccacatttctcaacaagattgtgtgc
aaacattggctacgaggcctgtgcaagaagggcctcaactgcgagtttttgcacgagtac
aatctccaaaagatgcccgagtgccagttctatgtcaagaacggcttttgcacacagtca
ccagactgccagtaccttcacattgatcccgcttccaagatccccgtgtgcttcaactac
gaaaagggcttctgtaagatgggacccgagtgctcaagaaaacacatcagacgcatgccc
tgcgagctgtacatgacgggcttctgtccaaagggacgggtatgcgagtttgcacatccc
aagtttgtcggcatctacgactacatgatcatcaagcccaatcccaaggacaaggccaag
gacgagaccaaacaggagaccaaggaggaagcattacaataa
DBGET
integrated database retrieval system
