KEGG   Yarrowia lipolytica: 2912919
Entry
2912919           CDS       T01033                                 
Symbol
YALI2_E01308g
Name
(RefSeq) Histone deacetylase RPD3
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
yli  Yarrowia lipolytica
Pathway
yli03082  ATP-dependent chromatin remodeling
yli03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:yli00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    2912919 (YALI2_E01308g)
   03083 Polycomb repressive complex
    2912919 (YALI2_E01308g)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:yli03036]
    2912919 (YALI2_E01308g)
Enzymes [BR:yli01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     2912919 (YALI2_E01308g)
Chromosome and associated proteins [BR:yli03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     2912919 (YALI2_E01308g)
   HDAC complexes
    Sin3A-HDAC complex
     2912919 (YALI2_E01308g)
    BRAF-HDAC complex
     2912919 (YALI2_E01308g)
    REST complex
     2912919 (YALI2_E01308g)
    SHIP complex
     2912919 (YALI2_E01308g)
    MiDAC complex
     2912919 (YALI2_E01308g)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     2912919 (YALI2_E01308g)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    2912919 (YALI2_E01308g)
  Chromatin remodeling factors
   NuRD complex
    2912919 (YALI2_E01308g)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 2912919
NCBI-ProteinID: XP_504286
UniProt: A0A1H6Q3J7 Q6C4X6
LinkDB
Position
E:complement(2810957..2812333)
AA seq 458 aa
MVFTQEPFDPITVKPNEKKRVAYFYDSDVGNYAYGAGHPMKPHRIRMAHSLIMNYGLYKH
MEIYRAKPATKQEMCQFHTDEYVDFLSRVTPDNMEHFAKEQAKFNVGDDCPVFDGLFEFC
GISGGGSMEGAARLNRGKCDIAINWAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHPRV
LYIDIDVHHGDGVEEAFYTTDRVMTCSFHKYGEFFPGTGELRDIGAGKGKNYAVNFPLRD
GIDDTNYKNVFQPVIKAIMEWYQPTVVVLQCGGDSLSGDRLGCFNLSMQGHANCVNYVKS
FGLPVLVVGGGGYTMRNVSRTWTFETGLLLNKMVGPDIPYNDYYEYYGPDYKLEVRPSNM
QNANSPEYLDKILTQVLVNLGRTKFAPSVQMTDVPRDAPDDGDEEEDSAKAKDTKGGSQM
AIDEQIEHPNEFYDDDNLEGGDAKDINNFKDKDVAMED
NT seq 1377 nt   +upstreamnt  +downstreamnt
atggtatttacgcaagagccgtttgaccccatcacggtcaagcccaacgaaaaaaaacgg
gtggcgtacttctacgactcggatgtcggcaactacgcctacggcgccggccaccccatg
aagccccacagaatacgaatggcccactcgctcatcatgaactacggtctctacaagcac
atggagatctaccgggccaagcctgccaccaagcaggaaatgtgccagttccacacggac
gagtacgtcgatttcctgtcgcgcgtcactccggacaacatggagcactttgctaaggag
caggcaaagttcaacgtcggagacgattgtcccgttttcgacggtctgtttgaattctgc
ggaatttccggcggaggatctatggagggagccgcccggcttaacagaggcaagtgtgat
attgccatcaactgggccggaggactccatcacgcaaagaaatccgaggcgtccggattc
tgctacctcaacgacattgtgctgggcatcatcgagctgctcagataccacccccgagtc
ctgtacattgatatcgacgtgcaccacggagacggagttgaggaggctttttacaccacg
gaccgagtcatgacgtgctcgttccacaagtacggagagtttttccccggtacaggtgag
ctgcgggacattggagccggaaagggcaaaaactacgcagttaacttcccgttgcgagac
ggaatcgacgacacaaactacaaaaacgtgttccagcccgtcatcaaggccatcatggag
tggtaccagcccactgtcgttgtcctgcaatgcggtggtgactcgctgtcgggtgaccgt
cttggatgtttcaacctgtccatgcagggtcatgccaactgcgtcaactacgtcaagtcc
tttggtttgccggttctggtggtcggaggaggaggctacacaatgcgaaatgtgtcaagg
acgtggacttttgagaccggtctgcttctcaacaagatggtgggcccggatatcccctac
aacgattactacgaatactacggacccgactataagctcgaggtgcgaccttctaacatg
cagaatgccaactctcccgagtacctggacaagattctcacccaggtgcttgtcaacctt
ggtcgaaccaagtttgcaccttctgtgcagatgaccgatgtgccccgagacgctcctgat
gatggagatgaagaggaggactcggccaaggccaaggacactaagggcggctcccagatg
gccattgacgagcagattgagcaccccaacgagttttacgacgacgataacctcgagggt
ggagatgccaaggacatcaacaacttcaaggacaaggatgtcgccatggaggactaa

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