Yersinia massiliensis: DA391_02665
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Entry
DA391_02665 CDS
T05402
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
yma
Yersinia massiliensis
Pathway
yma03420
Nucleotide excision repair
yma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DA391_02665
03430 Mismatch repair
DA391_02665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yma03400
]
DA391_02665
Enzymes [BR:
yma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DA391_02665
DNA repair and recombination proteins [BR:
yma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DA391_02665
MMR (mismatch excision repair)
Other MMR factors
DA391_02665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
AAA_11
AAA_22
ResIII
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AVX40302
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All DBs
Position
570025..571917
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AA seq
630 aa
AA seq
DB search
MNLSSSQAQIVHAPFNKAIQVLASAGSGKTRVLTERVRYILQNTKKDGVIALTFTNKAAE
EMSVRLEDCIEAEDRAWIATIHSVAQRILEKYGHTVGLPAELHIYDRDKDRMEVFLQSLR
EDGVNIDEYLNISDSKELKSREKNLQNYMDIFSRIKRELFTESDVTEKYPNSNIWKVFQD
YQSSLVNSGGIDYDDILVYAHKILLTHNWIAQIYRSQYKHVCIDEAQDLNKAQYEFIKAL
CGDVIHSVFMVGDPNQMIYGFNGSSKEYLCTYFLEDFTPFQFELRENYRSAKAIIRAANK
LKPNSQAELDYALEGGVKIVSADTEEAEAEWITSTVKLLLELKTHPEIEGDISLDKMVVI
ARNRFVFNKLEACLKQNNIHFSMRKGERQLEPTTIFGRILDYSIRIKLNPKDWVDGKKLC
SLLGVIAPTSWSNGVLNILANQTKNLDRENAELYSELMNSINSLDVDEPNIRKFVRLFEE
KLTSLISQGTAPSEGKSEEIKLSLDELNEFSRAWTLFKRKGLGNSLVAFRNALALGQLTE
NSLENGLLLSTVHTMKGLEKDIVFLMGMCEGVFPDYRANSLKEIDEERNNAFVAVTRAKR
WLYVTYPKQRMMPWKDLKFQQKSRFVREIE
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
ttgaacttatcatcaagtcaagctcaaatagtgcacgcaccatttaataaagcgattcaa
gtgcttgcttcagccggttctggtaaaacacgagttttaactgaacgagttcgctatata
ttgcagaatacaaaaaaagatggagtgatagcgcttactttcacaaacaaagctgcggaa
gaaatgtctgttcgcctagaggactgtattgaagcggaagatagggcttggatagcaaca
attcattctgtggctcagcgtattcttgagaagtatgggcatacagtaggattacctgca
gagcttcatatttatgatcgagataaagatcgaatggaagttttcctccaatccttacgt
gaagatggcgtaaatattgatgaatatctgaatatttctgattctaaggagctaaaaagt
cgagaaaaaaatcttcaaaattatatggatatattttcaaggatcaagcgtgagctattt
acagaatcagatgtaacagaaaaatatccaaacagtaatatttggaaggtctttcaagac
tatcaatcatctttagtcaatagtggtgggatagattatgatgacatattagtttatgct
cacaaaattttattaacacataactggatcgctcaaatttatcgttctcagtacaaacat
gtttgtatcgatgaagctcaagacttaaataaagcccagtatgagtttattaaggcattg
tgcggagatgtcatccacagtgtattcatggtgggagatccgaatcagatgatttatggg
ttcaatggttcttcaaaagagtatctttgcacctatttcttggaggattttactccattt
cagtttgaattaagagaaaactatcgtagcgcaaaggctattattagggctgcgaataaa
ttaaagccgaactctcaagcggaacttgattatgccttagaaggcggtgttaagatagtt
tctgctgatacggaagaagctgaggctgaatggattacatctacagttaagctgctctta
gagttaaaaacacatcctgaaatagagggtgacatatctttagataaaatggtggttata
gcaaggaatagattcgtttttaataaactagaagcttgtttaaaacaaaataatatccat
ttttccatgagaaaaggagagcgtcaactagagcctacgacaatttttggaagaattctc
gattactctattcgcataaagctaaatccaaaagattgggttgatggtaaaaagttgtgc
tcgctattgggagttatagcgcctacgtcatggtcaaatggtgttttaaatattttagcc
aatcaaactaaaaatctggatagagaaaacgctgaattgtattctgagttgatgaattca
ataaatagcctagacgttgatgaacctaatataagaaagttcgttcgtttgtttgaagaa
aagttaactagtttaattagtcaaggtacagctccatctgaagggaagtctgaagagata
aaattaagtttagatgaattgaatgagtttagcagagcttggaccttattcaaacgcaaa
gggttgggaaattctttagtcgcttttagaaatgctttagcccttggtcagttaacagaa
aactcattagaaaatgggttgttattgagtaccgttcatactatgaagggacttgaaaaa
gacatcgtttttttgatgggaatgtgtgagggtgttttccctgattaccgagctaactca
ttaaaagaaattgatgaagaacgtaataatgcctttgtggcagtaactcgcgcaaagcgt
tggctttatgttacgtaccctaaacaaagaatgatgccttggaaggatcttaagttccaa
cagaaatctcgctttgtcagagaaatagagtaa
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