Yersinia massiliensis: DA391_04455
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Entry
DA391_04455 CDS
T05402
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
yma
Yersinia massiliensis
Pathway
yma03410
Base excision repair
yma03430
Mismatch repair
yma03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DA391_04455
03430 Mismatch repair
DA391_04455
03440 Homologous recombination
DA391_04455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yma03400
]
DA391_04455
DNA repair and recombination proteins [BR:
yma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DA391_04455
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DA391_04455
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DA391_04455
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
FAM212
Motif
Other DBs
NCBI-ProteinID:
AVX36976
UniProt:
A0ABM6UR44
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All DBs
Position
978664..980397
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AA seq
577 aa
AA seq
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MTLKTQLRRREEVDGSHLPEQLHPLLRRLYASRGVTSSEELERGVKGLLAWQQLDGIDAG
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNIDYLVPNRFDDGYGLSPE
VVEQVAALGAELIVTVDNGISSHAGVDLAHAKGIQVLVTDHHLPGETLPAAEAIINPNLA
GCDFLSKSLAGVGVTFYLMLALRTRLRDSGWFEQRALAVPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDM
SIGVALLLSDDIAQARALAIDLDSLNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGLLKGSGRSVAGLHMRDALERLDTLNP
GLILKFGGHAMAAGLSLEQDKFDEFRQCFADLVGEWMDASQLEGVVWSDGELKGNDLSIE
TAELLRDGGPWGQSFPEPTFDGRFRILQQRLVGERHLKLMVEPLDGGPLLDGIAFNIDTT
LWPDSSVREVKLAYKLDINEFRGNRSVQLLIQHLWPY
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgacattgaaaactcaacttcgtcgtcgtgaagaagtggatggcagccatttgcctgaa
caattgcatcctctgttacgccgcctttatgccagccgtggtgtgacaagttcagaagaa
ctagagcgcggtgtcaaggggctgctggcatggcagcaactcgacggcattgatgcgggt
gtcaccctattgcaacaggctctggctgatcgtcggcgcatcgtgatcgtcggcgatttt
gatgctgatggtgcgaccagcacggcactggccgtgctggcgttgcgcagcatgggtggc
agtaatattgattacttagtgccaaatcgttttgacgatggctacgggcttagccctgaa
gtcgtcgagcaagttgccgcccttggcgcggaactgattgtcacggtagataacggtatt
tcctcccacgcaggggtggacttggcacatgccaagggcattcaagtgctggttaccgat
catcatttacccggtgaaacgctgcccgcggctgaggccatcattaaccccaatttagcc
ggttgcgattttctgtctaaatctctcgcgggggttggtgtcactttttatctgatgttg
gcattacgtactcgcctcagagatagtggctggtttgagcaacgtgcgctagctgtcccc
aatttagcggaattgctggatttagttgcattgggcactgtcgccgatgtggtgccactg
gatgccaataatcgcatattggtacatcaaggtcttagccgtattcgtgcagggaaatgc
cgcccagggatccgcgcattactggaagtggcgaaccgtgacgccagacagttagccgcc
aatgacttgggcttttctctcggccccagactgaatgcagcagggcgtttggatgatatg
tctattggggtggcgctgttgctcagtgacgacattgcgcaggctcgcgcactggcaatc
gatcttgatagcctcaatcagactcgccgcgagatagagcaaggtatgcaggtcgaagcc
ctgcaactgtgtgaccaactggagcgcaccagtactgagttaccttacggtatcgcgatg
tatcaccccgagtggcatcaaggtgtggtgggtattttagcctcacggattaaagaacgt
tttcatcggcccgtgattgcatttgcccctgcaggagagggtttactaaaaggctcagga
cgcagcgtagcggggttacatatgcgtgatgcccttgaacgcctcgatactttaaaccct
ggcttgattctgaagtttggcggacatgctatggcggcaggattatcgctagagcaggac
aaatttgatgaatttcggcaatgtttcgctgatttagtcggtgagtggatggatgcttca
caattagaaggcgtagtctggtctgatggtgaactgaaaggcaacgatttatcgattgaa
acggcagagttgcttcgcgatggcggcccttgggggcaatcattcccagaacccactttt
gatggcagattccgcattttacaacagcggctagtgggggagcggcatctgaaacttatg
gttgaaccattagatggcgggcctttgctcgatggcatcgcgtttaatattgatacgacg
ttatggcctgacagcagcgtgcgtgaagttaagctcgcgtataagctcgatattaatgag
tttcgcggtaaccgcagtgtccagttgctgatccaacatttgtggccttattag
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