Yersinia massiliensis: DA391_12790
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Entry
DA391_12790 CDS
T05402
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
yma
Yersinia massiliensis
Pathway
yma00040
Pentose and glucuronate interconversions
yma01100
Metabolic pathways
yma02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
yma00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
DA391_12790
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DA391_12790
Enzymes [BR:
yma01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
DA391_12790
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GFIT
Motif
Pfam:
Pectate_lyase_4
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AVX38462
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Position
2750956..2752353
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AA seq
465 aa
AA seq
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MLNKIKFIMTGVIMHQSFTLRRTVISSALAMIISASFIYSSGVAARDLGRNILANGDGWG
SFGPGVSGGSAADQSHIFVVSTWQEFRDALGGTSAHNQSTPRIIYVKGTINAMDKDGTVL
TCDDIANKIVVPDTGKVFSMADFIAHFNPEGAWGMVTPSGPLEVARIEAAESQTQQIRQR
FGSNVTLIGVGKDAHIIGAHLLARDVSNIIIRNLRISDAYDCFPEWDPTDGSAGNWNSLY
DNLSIWTTQHIWVDHVTLDDGEHPRQSLPKVFGRVFQVHDGLMDVTHSSNYVTASYNIFD
DHDKVNLIGSSDSRLEDRDKLKVTMHHNHWRNPGQRAPRVRFGQVDVYNNYAEVLAAQDF
TSLWGVGFESAIYAEKNAIDLADNIPASKIIKRYLGHHILTKDNLVNGTPTDLLAVYNAS
VSAADQLTDNVGWVPTLRLHVNDVSDVKAIVTSQAGAGILDSTLP
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
ttgttgaataaaattaaatttattatgacaggagtcatcatgcatcaatcctttactctg
cggcgaacagtcatttctagcgcactggccatgattatttccgccagtttcatctattcc
tccggcgtggcagcacgtgacttaggtaggaatatattagcgaatggcgatggatggggg
tcatttggcccaggcgtatcaggcggaagtgcagccgatcagagccatatctttgtggtc
agtacttggcaagagttccgcgatgcgctcggcggaacgagtgctcataatcaaagcacc
ccacgtatcatctatgttaaaggcacgattaatgcgatggataaagatggcacggtgctg
acctgtgatgacatcgctaataagattgttgtacccgacaccggcaaagtgttcagcatg
gccgattttatcgcacattttaaccctgaaggggcgtggggcatggtgaccccttccggt
ccacttgaagtggcgcgtattgaagcggccgaatcgcaaactcagcagatacgacaacgc
tttggctctaatgtcactctgatcggcgtaggtaaggatgcgcatattattggtgctcac
ctgctagcaagagatgtctcgaatatcattattcgtaacctacggatctctgatgcttac
gactgtttccctgaatgggaccccaccgatggcagtgcgggtaactggaatagtctgtac
gataatttgtcgatatggacgactcaacacatttgggttgatcacgtcacgctggatgat
ggtgagcatccgcgccaatcattgccgaaggtctttggcagggtatttcaggtacatgac
gggttgatggatgtcacccatagcagtaactatgtgaccgcatcttacaatatctttgac
gatcacgataaagtgaacctgataggttcctccgactctcgcctagaagatagagataaa
ctcaaagtcacaatgcatcacaaccactggcgaaacccaggccaacgcgcaccacgcgtc
cgctttgggcaagtggatgtctacaataattatgctgaagttctggctgcacaagacttt
accagcttgtggggggtagggtttgaatcggccatctatgcggaaaaaaatgccattgac
ttggcagataacatcccggccagcaaaatcattaaacgctatttaggccatcatattctc
accaaagacaaccttgttaatggtacgccaaccgacctattggccgtttacaatgcttcg
gtttcggctgccgatcaactgacggataacgtcggttgggtgccgacactgcggttacac
gttaatgacgttagcgatgtcaaagcaatcgtcacgagccaagcaggggccggtattctc
gacagcaccctcccctga
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