Yersinia massiliensis: DA391_19790
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Entry
DA391_19790 CDS
T05402
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yma
Yersinia massiliensis
Pathway
yma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DA391_19790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yma03019
]
DA391_19790
03009 Ribosome biogenesis [BR:
yma03009
]
DA391_19790
Enzymes [BR:
yma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DA391_19790
Messenger RNA biogenesis [BR:
yma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DA391_19790
Ribosome biogenesis [BR:
yma03009
]
Prokaryotic type
rRNA helicases
DA391_19790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVX39698
UniProt:
A0A2R4NUD7
LinkDB
All DBs
Position
complement(4281397..4283343)
Genome browser
AA seq
648 aa
AA seq
DB search
MTTEFETSFADLGLSAPILSALAGLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIKAELKAPQVLVLAPTRELAIQVAEALSSFSKDMNGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVR
FLESEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLDRLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NIERTMKLTIPEVQLPNAELLGERRLAQFAAKVGQQLESSDLDLYRALLAKLQPEEEFDL
ETLAAALLKMAQGERPLILPPEAPRRPQREFSRDDRSNDRGRDRGDSRRDSRDGGDRPAR
RERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM
PGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGGRSERRDGAGAPPR
RSFGSDRAPAGNGGERRGNRDGQRSSAPRRDDAAAPAAAPTRRRFGDA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagtttgaaacctcttttgctgatctggggctgtccgctcctattctttcc
gctctggctggcctgggttatgaaaaaccctctcctatccagctggaatgtatcccacat
ctgttaaacggccgtgatgtattgggcatggcacagacaggtagtggcaaaacagccgcg
tttggtctgccgctgttacacaatattaaagctgagctgaaagcaccacaggttctggta
ttagcaccaacccgtgagttggctattcaggtcgctgaagcactgtctagcttctctaaa
gatatgaatggcgtcaacgttgtggccctgtacggcggccaacgttatgacgttcaatta
cgcgctttgcgccaaggtccacaaattgttgtgggtaccccaggtcgtctgttagaccac
ctgaaacgtggcaccctgaacttgtccaacctgagcggtttggtgttggatgaagcagat
gaaatgctgcgtatgggctttatcgaagacgttgaaactatcatggcgcagatcccggct
gaacatcagaccgcgttgttctctgcaaccatgccagaagcgattcgtcgtattactcgt
cgtttcatgaaagatccgcaggaagtgcgcattcagtctagcgtgacgacccgtccagat
atcagccagagcttctggagagtgggtggcggctataacaagaaagaagcgttggtgcgt
ttcttggaatctgaagatttcgacgctgccatcatcttcgtgcgtactaaaaacgcgaca
ctggaagtggctgaagccttggagcgtagtggttatagcagcgctgcactgaacggcgat
atgaaccagtctttacgtgagcagacacttgaccgcctgaaagatggccgtttggatatt
ctgatcgcgaccgacgttgctgctcgtggtttggacgttgaacgtatcagcttggttgta
aactatgatatccctatggattcagagtcttacgttcaccgtatcggccgtaccggtcgt
gctggccgtgctggtcgcgcattactgttcgttgagaaccgtgaacgtcgcctgttgcag
aacatcgaacgcacgatgaaactgactattcctgaagttcagttgccaaacgcagaattg
ctgggcgagcgccgcttagcgcagttcgctgctaaagttggccaacagctggaaagcagt
gatttggacttgtaccgtgcattgctggctaaactgcaaccagaagaagagtttgatctc
gaaacattggctgcagcattgctgaaaatggcgcaaggcgaacgtcctctgattctgcca
ccagaagcgccacgtcgtccgcagcgtgagttcagccgtgatgatcgcagtaatgaccgt
ggtcgtgatcgtggtgatagccgtcgtgacagccgtgacggtggtgatcgtccagcgcgt
cgtgaacgtcgtgatgttggtgagatggaactgtatcgcattgaagtgggccgcgatgat
ggtgttgaagttcgtcatatcgttggcgctatcgctaacgaaggtgatatcagcagccgt
tatatcggtaacatcaagttgtttgcttctcactcaacgatcgaattaccaaaaggtatg
ccgggcgaaatgttatctcacttcacccgcactcgtatcctgaacaagccgctgaacatg
cagttgttgggcgatgcacaaccacacgagcgtcgtgagcgtccagctggcggtaatggt
ggtgagcgtcgtggtggtggtcgttcagaacgtcgtgatggtgcaggtgctcctcctcgt
cgttcattcggtagcgatcgtgctccagccggtaatggtggcgagcgccgtggtaaccgt
gatggccagcgttcatctgctccacgtcgtgatgatgccgcagcacccgcagcagcacca
actcgccgtcgcttcggtgatgcataa
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