Yersinia massiliensis: DA391_21375
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Entry
DA391_21375 CDS
T05402
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yma
Yersinia massiliensis
Pathway
yma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DA391_21375 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yma03021
]
DA391_21375 (rpoC)
03400 DNA repair and recombination proteins [BR:
yma03400
]
DA391_21375 (rpoC)
Enzymes [BR:
yma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DA391_21375 (rpoC)
Transcription machinery [BR:
yma03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DA391_21375 (rpoC)
DNA repair and recombination proteins [BR:
yma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DA391_21375 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AVX39970
UniProt:
A0A2R4NUZ7
LinkDB
All DBs
Position
complement(4589226..4593446)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNIEGESTTRTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPDAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNSKGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGTADILVPRNTLLDEKWCDLLEDNSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGGTDFLEGEQAEMSRVKIANRQLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRARRKALGEVPV
VPQVSADEATANLAELLNAGFGNSKD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcttggtcgttcggcgaagtgaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggtgttatctgtgagaaatgcggcgttgaagtgactcaaactaaagtacgccgtgag
cgtatgggtcacatcgaactggcttctccaactgcgcacatctggttcctgaaatccttg
ccttcgcgcatcggtttgctgctggatatgccattacgtgacatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggcatgaccaacctagaacgtcgccagatcctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaagctatccaagccttgttgaaaaacatggatctggaagctgagtgcgagatc
ctgcgcgaagaattgaacgaaacaaattctgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgtttgtccaatctggtaacaagccagagtggatgatcctgacc
gtgctgcctgtgttgccgccagatctgcgtccattggttccattggatggcggtcgcttt
gcgacttctgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctggacttggctgcacctgacatcatcgtacgtaacgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgcggtcgtgcaattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggccgttcggttattaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggctcttgagctgttcaaaccgttc
atttacggcaagctggaactgcgtggtcttgcgactaccatcaaagcagccaagaaaatg
gttgaacgtgaagaagcggttgtttgggatatcttggatgaagttatccgtgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaagcgtttgaaccggtt
ctgatcgaaggtaaggcaatccagttgcacccattggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgttcacgtaccgctaacactggaagctcagttagaagcg
cgtgcgttaatgatgtctaccaacaacattctgtcaccagcgaacggcgagccaatcatc
gttccttcacaggacgttgtattgggtctgtattacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggttctgactggcccgaaagaagctgagcgtatttaccgcgctggc
ctagcatctttgcatgcacgggtaaaagtccgtattactgaagaaatccgtaatatcgaa
ggcgaaagtacaacacgcaccagcattatcgatacgactatcggccgtgccattttgtgg
atgattgtcccgaaaggcctgccttactctatcgttaaccaaccgttgggtaaaaaagcc
atttctaagatgctgaacacctgttaccgcatcttgggcttgaaaccaaccgttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagatgcgaaagcagggatcatcgaagaagctgaaaccgaa
gttgccgagattcaggaacagttccaatccggtctggtgactgcgggtgaacgttataac
aaagtgatcgatatctgggctgcggctaacgaacgtgttgctaaagcgatgatggataac
ttgtctgtcgaagacgtcgtcaacagtaaaggcgaagttgagcagcaggtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagcta
gctgggatgcgtggcctgatggctaaaccagatggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaagggttgaacgtacttcagtacttcatctcaacgcacggtgctcgt
aaaggtttggcggataccgcattgaagactgcgaactccggttacctgactcgtcgtttg
gttgacgtggcacaggatctggttgtgactgaagatgactgtggtactcataacggtatc
gttatgacaccagttatcgaaggtggtgatgttaaagagccactgcgcgatcgcgttctg
ggtcgtgtgaccgctgaagaagttatcaagccgggtacggctgatattctggttccgcgt
aacaccctgttggatgaaaaatggtgtgatctgttagaagataactccgtcgacagcgtc
aaagttcgttcagttgtaagctgtgaaaccgatttcggtgtgtgtgctaactgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcagtgggtgttattgcagca
cagtccatcggtgagccaggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatccagcattcaggttaagaacaaaggcacgctgaaactg
agcaacgtcaagttcgtgaccaatgcagcaggcaagctggttattacttctcgtaatact
gagctgaagctgatcgacgaattcggtcggactaaagaaagctacaaagtgccttatggt
gccgtaatgggcaaaggcgatggtgcagaagttcagggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagttgtgaccgaagtgagtggcttcattcgctttgcggacatg
gttgacggccagaccattactcgccagaccgacgaactgactggtttgtcttctctggtg
gttctggattcagcagagcgtaccggtagcggtaaagacctgcgtccagcactgaaaatt
gttgatgccaaaggcaacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtacagttggaagacggcattcagatcggcgcaggtgatacc
ttggcgcgtattccgcaagaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgtcgtttggtgatctcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtagaacgcggtgacgtggtctccgacggcccagaatctccacatgacatt
ctgcgtcttcgtggtgttcacgcggttacccgttacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttgacgctggtggcaccgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtcagctggcagcagaaggcaaaattgaggct
acgttcacacgtgacctgctgggtatcaccaaggcatccttggcgaccgagtcctttatc
tctgcagcgtcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaactgcgcggcctgaaagagaacgttatcgtgggccgtctgattccagccggt
accggttacgcatatcatcaggatcgtgcgcgccgtaaagcgctgggtgaagtgcctgtt
gttccgcaagttagcgcggatgaagcaacagctaacttggctgaattgcttaacgctggt
ttcggtaacagcaaagactaa
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