Yersinia mollaretii: HRD69_01985
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Entry
HRD69_01985 CDS
T06716
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ymo
Yersinia mollaretii
Pathway
ymo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ymo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HRD69_01985 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ymo03021
]
HRD69_01985 (rpoD)
Transcription machinery [BR:
ymo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HRD69_01985 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QKJ01877
LinkDB
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Position
462472..464310
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLINGFVDPNAEEDIAPTA
THVGSELSTEEMDDDDKEEEDEEEEEDDNSIDPELARQKFSELREQYENTRMAIKKNGRS
HATAAAEILNLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKN
FVTLFASNETSDTWFAAAVAMGKPWSEKLKDVSDDVQRSLQKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtacttgaagaagcccct
gatgccgatgatttaatgctggccgagaacaccactgataccgacgatgacgcagcggaa
gctgctgcacaggtgttgtccagtgttgaatctgaaatcgggcgtacaaccgacccggtg
cgtatgtacatgcgcgaaatgggtaccgttgagctattgacgcgtgaaggcgagattgat
atcgccaagcgtatcgaagagggtatcaatcaggttcagtgctctgtagctgaataccct
gaagctattacttatctgttggaacaatatgatcgcgtcgaagcgggtgaagctcgttta
tccgacctgatcaacggctttgtcgatcccaatgccgaagaagatattgcgccgacggca
actcacgtaggctctgaattatccactgaagagatggatgacgacgacaaagaagaagaa
gacgaagaagaagaggaagacgacaacagcatcgacccagagctggcgcgtcagaaattc
agcgaattgcgtgagcagtatgaaaatacacgcatggccatcaagaaaaatggccgtagc
cacgctactgctgctgccgagattctgaatctttctgaagtgttcaaacagttccgtctg
gttccgaagcagttcgactatctggtcaataacatgcgcgccatgatggatcgcgttcgt
actcaagaacgtatcatcatgaagctgtgtgttgaacagtgcaaaatgccgaagaaaaac
ttcgttaccctgtttgccagcaatgaaaccagtgatacttggtttgcagcagcagtggct
atgggtaaaccatggtcggaaaaactgaaagatgtctcggacgatgttcaacgtagcttg
cagaaattacgccagatcgaagaagaaacgggtctgacgattgagcaagtgaaagacatc
aaccgccgtatgtctatcggtgaagcgaaagcgcgtcgtgctaagaaagagatggttgag
gctaacctgcgtctggttatctctattgcgaaaaaatacaccaaccgtggtctgcaattc
ctggatttgattcaggaaggtaacatcggtttgatgaaagcagtagacaagttcgaatac
cgtcgtggttataagttctcaacttatgcaacttggtggattcgtcaggcaatcactcgc
tctatcgcggatcaggcacgtaccatccgtattccggtacatatgattgagacgattaac
aaactcaatcgtatctcgcgtcagatgctgcaagagatgggccgcgagccaacgccagaa
gagttggctgaacgcatgctgatgccggaagacaagatccgcaaagtgctgaagattgct
aaagagccaatctcaatggaaacgccaatcggtgatgatgaagattcacatctgggcgat
ttcatcgaagataccactctggagctaccgctggactctgcaacctctgagagcctgcgt
tctgccactcacgacgtgttggctggcctgaccgcacgtgaagcgaaagttctgcgtatg
cgtttcggtatcgatatgaacactgaccacactttggaagaagtgggtaagcagttcgac
gttacccgtgaacgtattcgtcagatcgaagcgaaggcattgcgtaaattgcgccaccca
agccgttctgaagtactgcgcagcttcctcgacgattaa
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