Yersinia mollaretii: HRD69_17380
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Entry
HRD69_17380 CDS
T06716
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ymo
Yersinia mollaretii
Pathway
ymo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ymo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRD69_17380 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ymo03019
]
HRD69_17380 (rne)
03009 Ribosome biogenesis [BR:
ymo03009
]
HRD69_17380 (rne)
Enzymes [BR:
ymo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HRD69_17380 (rne)
Messenger RNA biogenesis [BR:
ymo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HRD69_17380 (rne)
Ribosome biogenesis [BR:
ymo03009
]
Prokaryotic type
rRNA processing factors
HRD69_17380 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
QKJ04616
LinkDB
All DBs
Position
3888526..3891951
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AA seq
1141 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPQEEATIERKRPEQPALATFSLPTEVPP
ESTPAPVSAKPAAAPQTAASTTAEQPGLFSRLLTGLKGIFSSSPEAEVKPVEVEKTETSE
NRRNDRRNPRRQNNGRKDRGDRTPREGRDNASRDNNGRDNANRDNNRDNSARDNNGRDNA
NREGREDQRRNNKRPAQQTAVAPTSTDIVEADKEQREEQPQRRGDRQRRRQDDKRQAPQD
VKANVDVPVVSVEEAQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNTQESTSQVAPAS
EPIATFAAPAVQEEVKLLPQATAQADDEATNDRNANNENGMPRRSRRSPRHLRVSGQRRR
RYRDERYPTQSAMPLAGAFASPEMASGKVWVRYPVAQPFEQAAFVENPVEEQLPVEVAAV
EVAVAEVLVVEAPVNVPAAIIAAPVVVAAVTETIAPTPAPQHKPGGSSSSVATVPGRAPV
VVPEVIAEPVAEVIEAAPVVEEAIVPEAVVEDTQVEINQAEETLVAETAVEEVAIVEEPV
VEETIVAETVVAEATVEETNETEANVITAAEAVHVTEPVTDDTPVAAVQQQPAAALPEGV
LFKHYASAPMTKAPAPDYAPESQTQGHWDRPAFDFAGKGSAGAHAAATQATAPATKPRPV
E
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggatattgaaagtccaggccatgaacagaaaaaagcgaat
atttacaaaggtaaaatcacccgaatcgaacccagtctggaagccgcctttgttgattac
ggcgctgaacggcatggtttcctcccactaaaagaaatttctcgcgaatatttccctagt
aattactcttcccatggccgcccgaacatcaaagatgtgctgcgcgaaggccaagaagtt
attgttcaggttgataaagaagagcgtggtaataaaggtgccgcgctcacgacgttcatc
agcctggctggcagctatttggttctgatgccaaacaacccacgagccggtggtatttct
cgccgtatcgaaggtgatgaccgcactgaattgaaagaagccctatcctctctgcaattg
cctgatggcatgggtctgattgtccgtactgcgggtgttggtaaatctgctgacgcgctg
caatgggacttgtcattccgcctgaagcactgggatgcgattaaaaaagcggcggagggt
cgccctgcaccgttcctgatccatcaggaaagtaacgtgattgtccgtgctttccgtgat
tacctgcgcccagacatcggcgaaattctgatcgacaacccgaaagttctcgagttggcg
aaagagcatatcgccgcgttaggtcgcccggatttcagtagcaaaattaaactctatagc
ggtgaaatcccactgttcagccactaccagattgagtcgcagatcgaatctgcattccag
cgcgaagtgcgtctgccatcgggtggttctatcgttatcgacaccaccgaagccctgacc
gcgattgatatcaactccgcacgcgcaactcgtggtggtgatatcgaagagacggccttc
aatactaaccttgaagctgcggatgaaattgcccgtcagttacgtttacgtgacttgggt
ggacttattgtcatcgacttcatcgatatgaccccagtgcgtcatcaacgtgaagtggaa
aaccgtttacgcgacgctgtccgtcaagaccgtgcccgtatccagattggccgcatctcc
cgctttggtttgttggagatgtcccgtcagcgcctcagtccatcactgggtgagtcaagt
caccacgtttgcccacgctgtagcggcaccggtacagtgcgtgataacgaatccctgtcg
ctctctattctgcgtttgattgaagaagaagcgctgaaagaaaatacccatgaagttcac
gctattgtgccggtacagatcgcttcgtacctgctcaacgaaaaacgtgaatcagtgaac
gccattgagaaacgtcaaggcggcgtgcgtgccgtgatcgtgccaaacgatcagatgcaa
acaccacactactctgtccttcgggtacgtaaaggcgaggaagttccttcccttagctac
ctgttgccacaactgcacgaagcagaaatggcacaaccgcaggaagaggccaccattgag
cgtaagcgcccagagcaacctgcgctggcgacattctctttaccgactgaagtaccgccg
gagtcaacacctgcgcccgtcagtgctaaacctgctgcggcaccacagactgcggcttct
accaccgctgagcaacctggcttatttagccgcctgctcactgggctgaaaggcatcttc
agttcatcacctgaagccgaagttaaaccggttgaagttgagaaaaccgaaactagcgaa
aatcgtcgtaatgatcgccgtaatccgcgccgccaaaacaatggccgcaaagatcgtggt
gaccgcacaccacgcgaaggtcgtgataacgcgagccgtgacaataatggccgtgataac
gccaaccgcgataataatcgtgacaacagtgctcgtgacaataatggtcgcgacaatgcc
aatcgtgaaggtcgtgaagatcaacgccgtaataataagcgtccagctcaacaaactgct
gtagcaccgacatcaactgatattgttgaagccgataaagagcagcgtgaagagcagccg
caacgccgtggtgatcgccagcgccgtcgtcaggatgacaaacgccaggcaccgcaggat
gttaaagctaacgttgatgttcctgtcgtcagtgtcgaagaagcacaacctgagcaagaa
gagcgtcaacaggttatgcaacgtcgtcaacgtcgccaattgaatcagaaagtccgtatt
caatcagcgaacgatgaactgaatacacaggaaagcacttctcaggttgccccggccagt
gagccaatagcgacttttgctgcaccagccgtgcaggaagaggtgaagttactgccacag
gcaacggctcaggcagatgatgaagcgactaatgatcgcaatgccaacaatgaaaatggc
atgccgcgtcgttcacgccgctcacctcgtcacctgcgtgtcagtggtcaacgccgtcgt
cgctatcgtgatgagcgctatccgactcaatctgctatgcctttggcgggtgctttcgcc
tcaccagaaatggcatcgggtaaagtttgggttcgttatccagtcgctcaaccgtttgaa
caagctgcctttgttgagaatccggttgaagagcaactgccagtcgaggttgccgcagta
gaagttgcggtagccgaggtgctagtcgtcgaagcaccggtaaatgttcctgcagccatc
atcgcagcaccagtggttgtcgcagctgtgactgaaactattgctccaacgccagcgccg
cagcataagcccggaggttcttcatcttcagttgccaccgttcctggtcgtgcacctgtt
gttgtgcctgaagttatcgctgagccagtagcagaagtgattgaagccgcccctgtcgtt
gaagaggctatcgtgcctgaagctgtggttgaagatactcaggttgaaataaaccaagct
gaagaaacacttgttgctgaaacggccgttgaagaagtcgccatcgttgaagaacctgtc
gttgaagagaccattgtcgctgaaacagtcgttgctgaagcgacggttgaagagacgaac
gagactgaagctaacgttataactgccgctgaagcagtgcatgtgactgaacctgtcacc
gatgacacgccagttgcagcagtacagcaacagcccgctgccgcgctccctgaaggcgtg
ttattcaaacactacgcttctgcaccgatgaccaaagcaccggcaccggattatgcgcca
gagtcgcaaacccaaggtcattgggatcgcccagcctttgattttgctggtaaaggctct
gcgggtgcacacgctgctgccactcaggcaacggcacctgcgacaaagccacgtcctgtc
gaataa
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