Yersinia mollaretii: HRD69_20210
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Entry
HRD69_20210 CDS
T06716
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ymo
Yersinia mollaretii
Brite
KEGG Orthology (KO) [BR:
ymo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ymo03009
]
HRD69_20210 (srmB)
Enzymes [BR:
ymo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HRD69_20210 (srmB)
Ribosome biogenesis [BR:
ymo03009
]
Prokaryotic type
rRNA helicases
HRD69_20210 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKJ05129
LinkDB
All DBs
Position
4557104..4558429
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AA seq
441 aa
AA seq
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MTVTNFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW
RKQTLLFSATLEGEAIREFGERILNEPVELEADPSRRERKKIQQWYYRADDIEHKTALLV
HLLKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVN
VLVATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLL
GRIGRYLKEPLKPRVIDELRPTSKEPSSKSTGKPSKKVLAKRKELKEASKEKAKVKVRHR
DAKNVGKRRQPKEKPDTKSSS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccaatttttccgaactcgatctcgatgaacgcctgattgacgcactgcgc
gacaaaggctatgagcgccctaccgctattcaagctgcggctattccgccagcgatggat
gggcgtgatgtattgggttcggctccaacaggaactggcaaaactgccgcctttttgctg
ccagccttgcagcatttgctggatttcccacgcaaaaaatctggcccacctcggattttg
atcctgacgccaacccgtgagctggcgatgcaagtggcggatcaagcccgtgaactggcc
aaacatacacaactggatatcgcgacaataaccggtggtgtggcttatatgaaccatgcg
gaagtcttcagcgagaatcaggacattgtggtcgctaccactggccgcttgctgcaatac
atcaaagaagaaaactttgactgtcgcgcagtagaaaccctgattctggacgaagctgac
cgtatgttggatatgggctttgcgcaggatatcgaaaccatcgcagcagaaacccgctgg
cgcaaacagacattgctgttctccgcaacactggagggtgaagctattcgcgagtttggg
gagcgtatcctcaatgagccagtagagctggaagccgatccatcgcgccgtgaacgcaaa
aaaattcagcaatggtactatcgcgctgacgatatcgaacacaaaacagccttgctggtg
catctgctcaagcaaccagaagtacaaaaatccattattttcgtacgcacccgtgaaaag
gtacatcaactggtgagttggttgcgtgaagctgggatcaacgcctggttcctcgaaggc
gaaatggttcaggccaaacggaccgaagccgttattcgtttaagtgatggccgagtcaat
gtgttagtggcgactgatgttgcttcgcgcggcttggatatcgacgatatcagtcatgtg
ttcaactttgacctgccgctgaccgcagatgtctacctccaccgcattggccgtactggc
cgcgcggggcgtaaaggcgtggcgatctcactggttgaagcacatgaccacttattactg
ggcagaatcggccgctaccttaaagagccgctgaaaccgcgtgtgattgatgaacttcgc
ccaaccagtaaagagccaagttcaaaatctaccggtaagccgtcgaaaaaggttttggct
aagcgtaaagagctaaaagaagcgagcaaagagaaagccaaagtgaaagttcgtcaccgc
gatgccaaaaatgtaggtaaacgccgtcagccgaaagaaaaaccggataccaagagttcc
agttaa
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