Yersinia pestis Antiqua (biovar Antiqua): YPA_0149
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Entry
YPA_0149 CDS
T00369
Name
(GenBank) putative DEAD-box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ypa
Yersinia pestis Antiqua (biovar Antiqua)
Pathway
ypa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPA_0149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypa03019
]
YPA_0149
Enzymes [BR:
ypa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YPA_0149
Messenger RNA biogenesis [BR:
ypa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YPA_0149
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
ABG12118
UniProt:
Q1CBQ4
LinkDB
All DBs
Position
complement(180214..181500)
Genome browser
AA seq
428 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAP
RNNRKRPG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgactgaacagaagttttccgacttcgccctgcacccgctagtt
gttgaagcccttgaaaacaaagggtttcagtattgcacgccgattcaggcgttagcattg
ccactcaccctctctgggcgtgatgtagcaggtcaggcgcaaaccggtacaggcaagacg
ctggcattcttggcgtctactttccattatttgctttctcacccagcagaagagggtcgc
cagactaatcaaccacgcgcattaattatggcaccaacgcgcgaattagccgtgcaaatt
cactccgatgcagaatcactttcccaggtaaccgggctgaagttaggtctggcttatggt
ggggatggctacgataaacagcttaaagtgctggaaagtggcgttgatatcttgatcggt
acaacaggccgtttaatcgattacgcgaaacaaaattatattaacctcggtgcgattcaa
gtcgtggtattggatgaagcggatcgcatgtacgatctaggctttattaaagatatccgc
tggctgttccgccgtatgccttccgttgataaacgtttaaatatgctgttttctgccact
ctctcgtatcgggtacgtgaattggcattcgaacaaatgaataatgcagaatatgttgaa
gtggaaccgttacaaaaaaccggtcaccgcatcaaagaagagctgttctatccttcaaat
gaagaaaaaatgcgtctgttacagacgttaattgaagaagaatggcctgatcgctgtatt
atttttgctaataccaaacaccgttgtgaagagatctgggggcatttggctgctgatggt
caccgcgtcggtttattgacgggtgatgttgctcagaaaaaacgcctgcgtattctcgaa
gatttcaccaagggcgatttggatattctggttgccaccgatgttgctgcccgtggttta
cacattccattagtgacccacgtcttcaactatgacctgccagatgactgtgaagattac
gttcaccgcattggccgtactggccgtgctggcgagagtggtcactccatcagtctggcc
tgcgaagagtatgcattaaacttgccagcgattgagacctatacgggccatagcatcccg
gtaagcaaatataacagtgacgcgctattaactgatctaccagcgcctaaacgcctagcc
cgtacccgcaccgggaatggcccacgccgtaattctgccccacgccgcagtggagcacca
cggaataaccgtaagcgaccaggctga
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