Yersinia pestis Antiqua (biovar Antiqua): YPA_3525
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Entry
YPA_3525 CDS
T00369
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ypa
Yersinia pestis Antiqua (biovar Antiqua)
Pathway
ypa03030
DNA replication
ypa03410
Base excision repair
ypa03420
Nucleotide excision repair
ypa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPA_3525
03410 Base excision repair
YPA_3525
03420 Nucleotide excision repair
YPA_3525
03440 Homologous recombination
YPA_3525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypa03032
]
YPA_3525
03400 DNA repair and recombination proteins [BR:
ypa03400
]
YPA_3525
Enzymes [BR:
ypa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YPA_3525
DNA replication proteins [BR:
ypa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YPA_3525
DNA repair and recombination proteins [BR:
ypa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
YPA_3525
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPA_3525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Obc1_cap
Prok-E2_E
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABG15487
UniProt:
A0A0E1NYA6
LinkDB
All DBs
Position
complement(3934152..3936950)
Genome browser
AA seq
932 aa
AA seq
DB search
MAQIAENPLLLVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT
LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK
DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWLADVEAGKWLDSK
KDRPTGQTSSQSFVAADTAPTAEVTAVLSQENYQTILDEKALADWIERLKAAEVFAFDTE
TDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLEDDKALKV
GQNLKFDKSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIA
GKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL
SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLP
ILKKTPGGAASTNEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHT
SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHL
SQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQL
GIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRK
AAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSA
EQKIRELMEQSMQLAVPLKVDVGVGANWDQAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattgcagaaaacccattgctccttgttgacggttcctcttacctctaccgt
gcttaccatgctttcccaccactgactaatggtagcggggagccaaccggtgcgatgtat
ggcgttctgaacatgctacgcagtctgctgctgcaatatcgaccaagtcatgttgcagta
gtttttgatgcaaaaggtaaaacgttccgtgatgaactttttgctgaatataaatcccac
cgaccgccaatgccggatgatttacgggtgcaaattgaacctcttcatcagatggttaaa
gcgatgggattgcctttattggtcgtttctggcgtcgaagctgatgatgttattggcacc
ctagctcgggaagccgaaaaagcaggccattcggtattaatcagtactggtgataaagac
atggcgcaattagttacgccgaatatcactttgatcaataccatgaataacactatttta
gggccgcaggatgtttgcgataaatatggtgtccctcccgaactgatcattgattttctc
gctctgatgggtgactcctccgataatattccgggagtacctggtgttggcgaaaaaaca
gcacaggctttattgcaaggtttgggtgggttggatacgttattcagtaatctggataaa
atatcaaccttgacgttccgtggtgcgaaaacaatgtcggccaagctagagcaaaataaa
gacgttgcttatctctcctataaattggctactatcaagacagacgttgagttagatgta
acctgtgatgagctaaccgtttctcctcccgatgataaacagttacatcagttattcagt
cgttatgaatttaagcgttggctggctgatgtcgaagccggcaaatggttggacagtaaa
aaagatcggccaacagggcaaacaagcagtcaatcttttgttgccgcagatacggcccct
actgctgaagtcaccgcagtgctttcacaagagaattaccagactattttagatgagaaa
gcattggctgattggattgagcgccttaaagccgctgaagtttttgcttttgatactgaa
actgatggccttgatacccttagctgtaacttaattgggatgtcttttgctgtcgctcca
ggtgaagcggcttatctgcctctggctcatgattacctggatgccccgccccaacttgac
cgtgactgggttctggcgaccctgaaaccacttctggaagacgataaggcgcttaaagtt
gggcagaacctcaagttcgataaaagtatgctggctcgttatggtatcgatctaaaaggt
atcgctttcgataccatgctggagtcttatgttttggatagtgttgcgggccgtcatgat
atggacagcttggcggagcgctacctcaatcataaaacgattacgtttgaagagattgcc
ggtaaaggtaaaaatcagctaacgtttaatcagattgcgttggagcaagctggcccgtat
gccgcagaggatgccgatgttacccttcaattacatttggtcttatggccaaaattacag
caaagtgaaggcctcaagcgggtattccaagaaattgagatgccgttattgccgatcttg
tctcgtattgagcggactggcgtattgattgaccaaaatatattagcggcacactcaaaa
gagctcaccatccgtttggatgagctggaaaagcaggcccatgaattggctgaagagcca
ttcaacctggcatcacctaaacagctacaggctattctttatgaaaagcaaaaattgcct
atcttgaagaaaacacctggaggcgcggcgtcaacgaatgaggaagtgctggctgagttg
gctctggattatcctttgccgaaggtgattctggaatatcgtggtctggcgaaactaaaa
agcacttacaccgacaaattgccgctaatgattaaccccgtctccggtcgggtacacact
tcctatcatcaggcagtgacagcaaccgggcgcttgtcttcccgcgatcctaacctacaa
aatatccctgtacgtaatgaagaggggcgacgtattcgccaggcctttattgcaccgaag
ggctactgcattatggcggccgactattcgcaaattgaactgcgtattatggcgcatttg
tcgcaggataacgggctgttagctgcatttgctgctgggcaggatattcaccgggcaacc
gccgcggaagtatttggttcgccattggaaaaagtgacgacggagcagcgtcgtagcgca
aaagcgattaattttggtttgatttatggcatgagtgcttttggcttggcacgccagttg
gggatccctcgtggagaggctcaacgttatatggatctctattttgagcgttatccgggg
gtgttggagtatatggagcgtactcgtaaacaggctgctgagcagggctatgtcacgaca
ctggatggtcgccgcctctatctgccggatattcactcacggaatgcaaaccgtcgaaaa
gcggctgaacgtgaggcgattaatgcccctatgcaaggtacggctgcggatattatcaag
cgggcgatgattgcggtggatggttggttacagcaagagccagaaccgttggtgcgtgtc
atcatgcaagtacacgatgaattggtctttgaagtgcatgaaagtgttttgcaaagtgct
gagcagaaaatccgtgagttgatggagcaaagtatgcaactggctgtgccattgaaggtg
gatgtcggtgttggcgctaactgggatcaagctcattag
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