Alloyangia pacifica: CEW88_02225
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Entry
CEW88_02225 CDS
T05431
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ypac
Alloyangia pacifica
Pathway
ypac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ypac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CEW88_02225 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypac03021
]
CEW88_02225 (rpoC)
03400 DNA repair and recombination proteins [BR:
ypac03400
]
CEW88_02225 (rpoC)
Enzymes [BR:
ypac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CEW88_02225 (rpoC)
Transcription machinery [BR:
ypac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CEW88_02225 (rpoC)
DNA repair and recombination proteins [BR:
ypac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CEW88_02225 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
PTS_EIIA_1
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AWI82579
UniProt:
A0A2U8H9A3
LinkDB
All DBs
Position
1:463426..467676
Genome browser
AA seq
1416 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEDEFLDAQDQYGADAFS
ANIGAEAIREMLAAIDLEAEAEQLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
ILTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGSPIIVPSQDMILGLYYTTIMREGMKGEGMKFSNIEEVEHAL
TAGEVHLHAKIECRVKQIDEEGNEVVKRYETTPGRVRLGALLPMNAKAPFDLVNTLLRKK
DVQKVIDTVYRYCGQKESVIFCDQIMSMGFKEAFRAGISFGKDDMVIPDSKWTLVEETRD
QVKDFEQQYLDGLITQGEKYNKVVDAWSKCNDKVTDAMMNTISANKRAEDGSEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRSHDCGTDRAITAEAAVNDGEVVASLAERILGRV
AADDIPHPVTGEVLVRAGQLIDERMADTIDEAAVQSTRIRSPLTCEAEEGVCAMCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFQEASQEGVIEFESAS
TLENSIGETLVMGRNMKLRIMGEDGKERASHKLGYGTKLFVKEGQSVKRGDKLFEWDPYT
LPILAEADGIAKHVDLSAGVAVRDETDEATGMTQKIVIDWRAAPKGNELKPEIILMDADG
EPVRNAAGNPLTYPMSVDAILSCEEGQEIKAGDVLARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIDPVDDTLEPKEYMIPKGKHIPVVEGDYVQ
KGDYIMDGNPAPHDILAIMGVEALANYMIDEVQDVYRLQGVKINDKHVEVIVRQMLQKWE
IHDSGDTTLLKGEHVDKAEFDAVNEKIEKKGGRPATGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQRVRRIATERDNKVIEVRRD
EAEQAALLAAPDASSSDVIGGDEFDTLVVDTPESRE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacgaacaacccgttcaacccgctgacgccgcccaaggtcttcgac
gagatcaaggtgtcgctggcgtcgcccgagcggatcctctcgtggtcctacggcgagatc
aagaaacccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgc
gcgcgcatcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatg
aagtaccgcggcgtcgtctgcgagaagtgcggcgtcgaagtcacccttcagaaagtgcgc
cgcgagcgcatgggccacatcgagctcgcagctccctgcgcgcacatctggttcctgaag
tcgctgccctcgcgcatcggcctcatgctggacatgacgctgcgtgacctcgagcgcgtg
ctgtacttcgagaactacgtggtgatcgagccgggcctgaccgacctgacctacggccag
atgatgaccgaggacgagttcctcgacgcgcaggaccaatacggtgccgacgcgttcagc
gccaacatcggtgccgaggccatccgcgagatgctcgccgcaatcgacctcgaagccgag
gccgagcagctgcgtgcggacctcaaggaagccaccggcgagctgaaacccaagaagatc
atcaagcgcctcaaggtggttgagtccttcctcgagtcgggcaaccgccctgagtggatg
atcctcacggtgattccggtcatcccgcccgaactgcgcccgcttgtgccgctcgatggt
ggccgcttcgcgacctcggatctcaacgacctgtaccgccgcgtgatcaaccggaacaac
cgcctcaagcggctgatcgaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgg
atgctgcaggaagccgtcgacgctctgttcgacaacggccgccgcggccgcgtcatcacc
ggcgccaacaagcgcccgctgaagtcgctctcggacatgctcaagggcaagcagggccgc
ttccgtcagaacctcctgggcaagcgcgtcgacttctcgggccgttcggtcatcgtgacc
ggtccggaactcaagctgcaccagtgcggcctgccaaagaagatggcgctcgaactcttc
aagcccttcatctactcgcggctggaggccaagggcctgtccagcaccgtgaagcaggcg
aagaagctggtcgagaaagagcgccccgaagtctgggacatccttgacgaggtcatccgc
gagcacccggttctgctgaaccgcgcgccgacgctgcaccgtctgggcatccaggcgttc
gaaccccagctgatcgaaggcaaggccatccaactgcacccgctcgtctgctcggcgttc
aacgccgacttcgatggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcag
ctcgaggcgcgcgtcctgatgatgtccacgaacaacgtgctgtcgcctgcaaacggcagc
ccgatcatcgtgccgtcgcaggatatgatccttggcctctactacacgaccatcatgcgc
gaaggcatgaagggcgaggggatgaagttctccaacatcgaagaggttgagcacgccctg
acggctggcgaagtgcacctgcacgccaagatcgaatgccgcgtgaagcagatcgacgaa
gagggcaacgaggtcgtcaagcgttacgagacgaccccgggccgcgtgcgcctcggcgcg
ctgctgccgatgaacgccaaggctccgttcgacctggtcaacacgctgctgcgtaagaag
gacgttcagaaggtcatcgacaccgtctaccgctactgcggccagaaagagtcggtcatc
ttctgcgaccagatcatgtcgatgggcttcaaggaagcattccgcgcgggcatctcgttc
ggcaaggacgatatggttatccccgacagcaagtggaccctcgttgaggaaacccgcgac
caggtgaaggacttcgagcagcagtatctcgacggtctgatcacccagggcgagaagtac
aacaaggtcgtggacgcctggtcgaagtgcaacgacaaggtcaccgacgccatgatgaac
accatctcggcgaacaagcgcgccgaggacgggtcggaaatggagccgaactcggtctac
atgatggcccactccggtgcgcgtggctcggtcacccagatgaagcagttgggcgggatg
cgcggcctgatggcgaagccgaatggcgacatcatcgagaccccgatcatctcgaacttc
aaggaaggcctgaccgttctcgagtacttcaactcgacccacggtgcccgtaagggtctg
tcggataccgctctgaagacggcgaactcggggtacctgacccgtcgtctggtggacgtg
gcgcaggactgcatcgtgcgctcgcacgactgcggcaccgaccgcgcgatcaccgcggaa
gcggctgtcaacgacggcgaagtcgtcgcatcgctggcggagcgtatcctgggccgtgtg
gctgcggacgatatcccgcatccggtcacgggtgaggttctggtccgggctggacagctc
atcgacgagcgcatggccgacaccatcgacgaagcggccgtgcagtccacgcgcatccgc
tcgccgctgacctgtgaggccgaagagggcgtctgcgccatgtgctacggccgtgacctc
gcgcgcggcaccatggtcaacaccggtgaagctgtcggcatcatcgccgcgcagtcgatc
ggtgaacccggcacccagctgacgatgcggaccttccacatcggcggcgttgcccagggt
ggccagcagtcgttccaggaagcgtctcaggaaggtgtgatcgagttcgagagtgcctcg
accctcgagaactccatcggcgaaactctcgtcatgggccgcaacatgaagctgcggatc
atgggcgaggacggcaaggaacgtgcgagccacaagctcggctacggcaccaagctgttc
gtcaaggaaggccagtcggtcaagcgcggcgacaagctgttcgaatgggatccctacacc
ctgccgatcctggcggaagcggatggtatcgcgaagcacgtcgacctctccgcaggtgtg
gctgtccgcgacgagaccgacgaagcgaccggcatgacccagaagatcgtgatcgactgg
cgtgcggcaccgaagggcaacgagctcaagccggagatcatcctgatggatgccgacggc
gagcccgtgcgcaacgcggccggcaacccgctgacctacccgatgtcggtggatgccatc
ctgtcctgtgaagaaggtcaggagatcaaggccggtgacgttctggcgcgtatcccgcgc
gagggcgcgaagacgaaggacatcaccggtggtctgccgcgtgtggccgaactcttcgag
gcgcgtcgtccgaaggaccacgccatcatcgccgagatcgacggctacgtgcgcttcggc
aaggactacaagaacaagcgccgcatcgcgatcgacccagtcgacgacacgctggagccc
aaggaatacatgattccgaagggcaagcacattccggtggtcgagggcgattacgtccag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctggccatcatgggt
gtcgaggctctggcgaactacatgatcgacgaagtccaggacgtctatcgactgcagggc
gtgaagatcaacgacaagcacgtcgaggtcatcgtccgtcagatgctgcagaagtgggaa
atccacgactccggcgacaccacgctgctcaagggcgagcacgtggacaaggcggagttc
gacgcggtcaacgagaagatcgagaagaagggcggccgtccggccaccggcgaaccgatc
ctcctcggcatcaccaaggcgtcgctgcagacccgctcgttcatctcggcggcctccttc
caggagaccacccgcgtgctcaccgaggcttcggtgcagggcaagaaggacaagctggtc
ggcctcaaggagaacgtcatcgtgggccgcctgatcccggcgggcaccggtggcgcgacc
cagcgggtgcgtcgcatcgcgaccgagcgcgacaacaaggtgatcgaagtgcgccgcgac
gaggccgaacaggccgcgctgctggccgctcccgacgcctcgtcgagcgacgtgatcggt
ggcgacgagttcgacacgctggtcgtggacacgccggaaagccgcgagtaa
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integrated database retrieval system
