Alloyangia pacifica: CEW88_03295
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Entry
CEW88_03295 CDS
T05431
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ypac
Alloyangia pacifica
Pathway
ypac03420
Nucleotide excision repair
ypac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEW88_03295
03430 Mismatch repair
CEW88_03295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypac03400
]
CEW88_03295
Enzymes [BR:
ypac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEW88_03295
DNA repair and recombination proteins [BR:
ypac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CEW88_03295
MMR (mismatch excision repair)
Other MMR factors
CEW88_03295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AWI82774
UniProt:
A0A2U8HAL0
LinkDB
All DBs
Position
1:complement(676256..678703)
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AA seq
815 aa
AA seq
DB search
MSSFDDMDAFEGASLSARAMAARPAPYLDDLNPAQREAVERLDGPVLMLAGAGTGKTKAL
TSRIAHLLTTGRARPNEILSVTFTNKAAREMKERVGRLLGHAVEGMPWMGTFHSICVKLL
RRHAELVGLKSNFTILDTDDQIRLLKQVIAANNIDEKRWPARQLSGLIDNWKNRAWTPDR
VPAAEASAFNNRGTELYAQYQTRLRELNACDFGDLLLHVVMIFQQHADVLEQYQRWFRFI
LVDEYQDTNVAQYLWLRLLAQGHTNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAHVV
RLEQNYRSTAHILAAASSVIRGNENRLGKELWTEAQGGEKVRLIGHWDGEEEARWIGEEI
EAAQRGSRGMRAFSLDDMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAM
AYFRLVVSPEDDLAFERIVNTPKRGLGDKAQQKIQLKAREHGVPLLVGARLLLRDKEITG
KGAAKLATFVDQIERWHDVARQQLGLPSEVQQDDDDLVLIDEDKPLSKVVSHMELAETML
DESGYTEMWQLDKNPDSPGRLENLKELVKALESFDNLQGFLEHVALIMDNETEETGAKVS
IMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGLKGLEEERRLAYVGITRAEELCTIS
FAANRRVFGQWQSALPSRFIDELPEAHVEILTPPGLYGGGYGAAGMSGGFGGGSGLETRA
AEANVYNSPGWKRLQERSSSARPVSQPRESRNTVIDLQAVSAFEMGERVFHQKFGYGEII
GLEGDKLEISFEKAGVKKVVARFVTAADSAGDVPF
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtttcgacgacatggatgcattcgagggggcctcgctgtcggcgcgggccatg
gcggcgcgtcccgcgccctatctcgacgatctcaacccggcgcagcgcgaggcggtggag
cggctggacggccccgtgctgatgctcgcgggggcgggcaccggcaagaccaaggcgctc
acctcccgcatcgcgcacctgctgaccaccggccgggcgcgaccaaacgagatcctctcg
gtgaccttcaccaacaaggccgcgcgcgagatgaaggagcgggtcggccgcctgctcggc
cacgcggtcgaaggcatgccctggatggggaccttccactcgatctgcgtcaagctgctg
cgccggcatgccgagctggtcgggctgaagtcgaacttcaccatcctcgacaccgacgac
cagatccgcctgctgaaacaggtgatcgcggccaacaacattgatgaaaagcgctggccc
gcccggcagctctcggggctgatcgacaactggaagaaccgcgcctggacgcccgaccgg
gtgcccgctgccgaggcttcggccttcaacaaccgcggcaccgagctttatgcccagtac
cagacccgcctgcgcgagctgaacgcctgcgatttcggggatctcctgctgcacgtggtg
atgatcttccagcagcacgccgatgtgctcgaacaataccagcgatggttccgcttcatc
ctggtggacgagtatcaggataccaacgtcgcccagtacctctggctacggctcctggcg
caggggcataccaacatctgctgcgtcggcgacgacgaccagtcgatctacggctggcgc
ggcgccgaggtgggcaacatcctgcgcttcgaaaaggatttccccggcgcccatgtggtg
cggctggaacagaactaccgctcgaccgcgcatatcctcgccgccgcctcctcggtgatc
cgcggcaacgagaaccggctcggcaaggagctgtggaccgaagcgcagggcggcgagaag
gtccgcctcatcggccattgggacggcgaggaagaggctcgctggattggcgaggagatc
gaggcggcgcagcgcggctcgcgcgggatgcgcgccttctcgctcgacgacatggcgatc
ctcgtgcgcgcgtcgcaccagatgcgcgccttcgaggaccgcttcctgaccatcggcctg
ccctaccgggtgatcggtggcccgcgcttctacgagcggctcgagattcgcgatgccatg
gcctatttccggctggtggtctcgcccgaggacgatctcgccttcgagcgcatcgtcaac
accccgaaacgcgggctcggcgacaaggcgcagcagaagatccagctcaaagcgcgcgag
catggcgtgccgctgctggtgggcgcacgccttttgctgcgcgacaaggagatcaccggc
aaaggcgcggccaagcttgccaccttcgtcgatcagatcgagcgctggcacgacgtggcc
cggcagcagctcggcctgccctcggaggtgcagcaggacgacgacgaccttgtgctgatc
gacgaggacaagccgctgagcaaggtggtcagccacatggaactggccgagaccatgctc
gacgagagcggctacaccgagatgtggcagctcgacaagaaccccgactcgccgggacgg
ctcgagaacctcaaggaactggtgaaagcgctggaaagcttcgacaacctgcagggtttc
ctcgagcacgtcgcgctgatcatggacaacgagaccgaggagaccggcgcaaaagtgtcg
atcatgacgctgcacgcggccaagggcctcgagttcccggcggtcttcttgccgggctgg
gaggacgggctcttcccctcgcagcgctcgatggacgaaagcggcctcaagggcctcgaa
gaggagcggcgcctcgcctatgtgggcatcacccgcgccgaggagctctgcaccatctcc
tttgcggcgaaccgccgggtcttcggacagtggcaatccgccctgccctcgcgattcata
gacgagctgcccgaggcacatgtcgagattctcacgccgcccgggctctacggcggtggc
tacggcgcggccggcatgagcggcggctttggcggcggctccgggctcgaaacccgtgca
gccgaggccaatgtctacaattcgccgggttggaagcggctgcaggagcgctcgtcgagc
gcgcgcccggtcagccagccgcgcgaaagccgcaacacggtgatcgacctgcaagcggtt
tcggccttcgagatgggcgagcgggtcttccaccagaagttcggctacggcgagatcatc
ggcctcgagggcgacaagcttgagatcagcttcgagaaagccggggtgaagaaggtggtg
gcgcgtttcgtcacggcggcggattcggcgggcgacgtacccttctga
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