Alloyangia pacifica: CEW88_08130
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Entry
CEW88_08130 CDS
T05431
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ypac
Alloyangia pacifica
Pathway
ypac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEW88_08130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypac03019
]
CEW88_08130
03009 Ribosome biogenesis [BR:
ypac03009
]
CEW88_08130
Enzymes [BR:
ypac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CEW88_08130
Messenger RNA biogenesis [BR:
ypac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEW88_08130
Ribosome biogenesis [BR:
ypac03009
]
Prokaryotic type
rRNA processing factors
CEW88_08130
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWI83647
UniProt:
A0A2U8HCI6
LinkDB
All DBs
Position
1:complement(1694150..1697002)
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AA seq
950 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEEAALAAEEDEDDKEKSRSKNARSRTRRS
RSRSKAEQASTGDKLVTGEVSEEVSGDVSEGISGMETIDLGDDVLDTRDDEGLSPMETVA
ETPVEEPVAEETDLKAPDEAPEADDQDDDHELDAAKSDDSIESVADDDTEEDIRPARKPR
ARKYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKIT
NAADRSKLKEIAQSIDVPKGAGLIIRTAGAKRTKTEIKRDYEYLQRLWEQIRELTLQSVA
PAKIYEEGDLIKRSIRDLYNREIDEVHVEGERGYRNAKDFMKMIMPSHAKNVKHYLDPMP
LFARYQVETYLGGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNL
EAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKKLKDKLKTDRARIQVGRISGFGL
LEMSRQRLRPGMIEATTQPCAACHGTGLIRSDDNMALNILRQIEEEGVRRRSREVLVKCP
VGIANYLMNQKREHVAQIEARYGMAVRIEGDTHLVSPDFSMEKFKTATRNVPEVVAPVVS
ATASLMDQVDEDYPGEEDEDEELIEAEAEAKAQSETDSDNGSGDNGSSDEDSDGKPKKRR
RRRRRSRSKNRDGQNGDETGADDEGNSEAKPEAHGEAVRQVAAEEVAEAAPETPAEAPAQ
AEAADAPAAEEASAEKPKRTRRSRSRKKAEPEVTVVAAEEAPAETPVEAQPEPGVVEAAV
EAPVEAEAPAETPVEQPVAEEAAAPAEVTETAVNAPVAEAPAEAAAETSKDTPVETEGDA
PVADEVAQEVAEVPVAEEAKAEPEPERTPEPVAAEADDASKPKRRGWWSR
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgatgccacccacgcggaagagacccgcgttgtggtggtc
gacggaaacaaggtcgaggaattcgattttgaatcggaaaacaagcgccagctagcaggc
aatatctacctggcgaaagtcaccagggtcgagccctcgctgcaggcagccttcgtggat
tacggcggaaaccgccacggcttcctcgccttctcggaaatccatcccgactactaccag
atccccgttgccgaccgtcaggcgctgatggaggaagaggctgctctggcggccgaagag
gacgaggacgacaaggaaaagtcgcgctcgaagaacgcgcggtcgcgcacccgccgctcg
cgctcgcgcagcaaggcggagcaggcgagcaccggcgacaagctggtcaccggcgaagtc
tcggaagaggtctcgggcgacgtgtccgagggcatctcgggcatggaaaccatcgacctc
ggggatgatgttctcgacacgcgcgacgacgaaggtctgtcgccgatggaaaccgtggcc
gaaaccccggtcgaggagcccgtcgccgaagagaccgatctcaaggcgccggacgaagcg
cccgaggccgacgatcaggacgatgaccacgagctcgacgcggcgaagtcggatgatagc
atcgagtccgtcgccgacgacgacaccgaggaagacatccgcccggcgcgcaagccgcgg
gcgcggaagtacaagatccaggaagtgatcaaggtccgccagatcctgctggtgcaggtc
gtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctatctgtcgctcgccggt
cgctactgcgtgctgatgccgaacaccgcccgtggcggtggcatctcgcgcaagatcacc
aatgctgccgaccgctcgaagctgaaggagatcgcgcagagcatcgacgtgccgaaaggc
gcggggctgatcatccggaccgccggcgccaagcgcaccaagaccgagatcaagcgcgac
tacgaatacctgcaacgcctctgggagcagatccgcgagctgacgctgcaatcggtggcg
cccgcgaaaatctacgaagagggcgatctcattaagcgctcgatccgcgacctctacaac
cgcgagatcgacgaggtgcacgtggaaggcgagcgcggctaccgcaacgccaaggacttc
atgaagatgatcatgccgtcccacgcgaagaacgtgaagcactacctcgacccgatgccg
ctcttcgcgcgctaccaggtcgagacctacctcggcggcatgttcaacccgaccgtgcag
ctgaaatccggcggctacatcgtgatcggcgtcaccgaggcgctggtggcgatcgacgtg
aactcgggccgggccaccaaggaaggctcgatcgaggagaccgcgctgaagaccaacctg
gaggccgccgaagaagtggcgcgccagctgcgtctgcgcgaccttgccggcctcatcgtc
atcgacttcatcgacatggaagagcgcaagaacaacgccgccgtcgagaagaagctgaag
gacaagctcaagaccgaccgcgcccgcatccaggtcggccgcatctcgggcttcggcctt
ctcgagatgtcgcgccagcgcctgcgcccgggcatgatcgaggccaccacgcagccctgc
gcggcctgccacggcaccggcctgatccgctcggatgacaacatggcgctgaacatcctg
cgccagatcgaggaagagggcgtgcgccgccgctcccgcgaggtgctggtgaaatgcccg
gtgggcatcgccaactacctgatgaaccaaaagcgcgaacacgtcgcccagatcgaggcg
cgctacggcatggccgtgcgcatcgagggggacacgcatctcgtcagccccgacttctcg
atggagaagttcaagaccgcgacgcgcaacgtgcccgaagtggttgcgccggtggtctcg
gcgaccgcctcgctcatggaccaagtcgacgaggattaccccggcgaggaagacgaggac
gaggaactgatcgaggcggaggccgaagccaaggcacagtccgagaccgacagcgacaat
gggtccggcgacaatgggtccagcgacgaggattccgacggcaagcccaagaagcgccgc
cgccgccgccgccgctcgcggtcgaagaaccgggatggtcagaacggcgacgagaccggt
gctgacgacgagggcaacagcgaggccaagcccgaggcgcacggcgaagcggtgcgccaa
gtggccgccgaggaggtcgccgaggctgcgccagaaactccggcagaggctccggctcaa
gccgaagccgcggatgctcccgccgccgaggaggcgtccgccgagaagcccaagcggacc
cgccgctcgcgcagccgaaagaaggccgagcccgaggtgaccgtggtcgccgctgaggaa
gcgccggctgaaaccccggtcgaagcccagcccgaaccgggtgtggtcgaagctgcggtg
gaagcgcctgtcgaagccgaggcccccgcagagacaccggtggaacaaccggttgccgaa
gaggcggctgcgcccgcagaggtgaccgaaaccgccgtcaatgcaccggtcgctgaggcg
cctgcagaggccgccgcggaaacgtccaaggacaccccggtcgaaaccgagggcgatgcc
ccggttgccgacgaggtggctcaagaggtcgctgaagtgcccgtcgccgaggaggccaag
gccgagcccgagcccgagcgcaccccggagcccgtcgccgccgaggcggacgacgcgtcc
aagcccaagcgcaggggctggtggagccgctga
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