Alloyangia pacifica: CEW88_10690
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Entry
CEW88_10690 CDS
T05431
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ypac
Alloyangia pacifica
Brite
KEGG Orthology (KO) [BR:
ypac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypac03032
]
CEW88_10690 (topA)
03400 DNA repair and recombination proteins [BR:
ypac03400
]
CEW88_10690 (topA)
Enzymes [BR:
ypac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CEW88_10690 (topA)
DNA replication proteins [BR:
ypac03032
]
Prokaryotic type
DNA Topoisomerases
CEW88_10690 (topA)
DNA repair and recombination proteins [BR:
ypac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CEW88_10690 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AWI84105
UniProt:
A0A2U8HH80
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All DBs
Position
1:complement(2219422..2222118)
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AA seq
898 aa
AA seq
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MPVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPAKDGSVDTEHDFDMTWEIGSDSRK
HVAAIAEALKNDNALILATDPDREGEAISWHLKEALTKRRSIKKDTAVSRVTFNAITKAA
VTEAMQNPREIDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVE
REMEIEAFNPREYWQVKALLSTPRGQEFEARLTTLAGKKLDRYDLENATQAEMAVQAVAK
RALKILSVEARPSTRNPSAPFMTSTLQQEASRKFGMGARACMNAAQRLYEAGHITYMRTD
GIDMAPEAVTACREAIADRFGKDYVPGSPRIYKNKAKNAQEAHECIRPTDMTKDAGDLKL
REDDQRKLYDLIWKRTLACQMEAAKLERTTVEIGSDDQQVGLRATGQVIVFDGFLKIYEE
GRDDVADDDDNRLPQIMQGENAAFAKSGLKAQHEKAAERATAASGVSSILSDNSAVLGTQ
SFTQPPPRYTEATLVKRMEELGIGRPSTYASVITTIQDREYVKKEQNRLIPEDKGRIVTI
FLLNFFRKYVGYEFTAELENELDEVSAGEMDWKALLGKFWRDFSAAISETSELRISEVLD
VLDDALAPQLYPPREDGSDPRVCPKCGTGQLHLKTSRTGGFVGCGNYPECTYTRPIAGEG
AEGDERLLGEDQGDEIWLKAGRFGPYVQRGEPTPENKKPPRASLPRGWSKDEMTLEKALV
LLSLPREVGEHPEGGTVSSNFGRFGPYIMHQLPDDAKPTYVNLKDPADVFEIGMNRAVEM
LAEKRANPGGRGRAAAKALKELGDHPDGGKIAIFDGRYGPYVKWEKVNATLPKDTDPESV
TMEQALEWIAEKAAKSGKKKAAPKKAAAKKTTTKKTTAKKTTAKKTPAKKTAAKAGDD
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgtcgtcgtcgaatccccggccaaggccaagacaatcaacaagtatctggga
tccgactacacggtgctcgcctcctacggtcacgtgcgcgacctgccggccaaggatgga
tcggtcgacacggagcacgacttcgacatgacctgggagatcggcagcgactcgcgcaag
cacgtcgccgccatcgccgaagcgctgaaaaacgacaacgcgctcattctcgcgaccgac
cccgatcgcgagggcgaggcaatctcatggcacctgaaggaggcgctgaccaagcgccgc
tcgatcaagaaggacacggccgtgagccgggtgaccttcaacgcgatcacaaaggccgcc
gtcaccgaggcgatgcagaacccgcgcgagatcgacgcgccactggtcgaggcctatctc
gcccgccgggcactcgactacctcgtcggcttcaacctctcgccggtgctctggcgcaag
ctgccgggcgcgcgctcggcgggccgggtgcaatcggtctgcctgcggctcatcgtcgag
cgcgagatggagatcgaggcgttcaacccgcgcgaatactggcaggtcaaggcgctgctc
tcgacgccgcgcgggcaggaattcgaggcccggctaaccacgctcgccggcaagaagctc
gaccgctacgatctcgagaacgccacccaggccgagatggcggttcaggccgtggccaag
cgcgcgctgaagatcctctcggtcgaggcgcggcccagcacgcgcaacccctcggcgccc
ttcatgacctcgaccctgcagcaggaggcgagccgcaagttcggcatgggtgcgcgcgcc
tgcatgaacgcggcgcagcggctctacgaggcggggcacatcacctacatgcggaccgac
ggcatcgacatggcccccgaggcggtcaccgcctgccgcgaagccatcgccgaccgcttc
ggcaaggactacgtgccgggcagcccgcgcatctacaagaacaaggccaagaacgcgcag
gaagcgcacgagtgcatccgcccgaccgacatgacgaaggacgcgggcgatctgaagctg
cgcgaggacgaccagcgcaagctctacgacctgatctggaagcgcacgctcgcctgccag
atggaggccgcgaagctcgagcgcaccacggtcgagatcggctcggacgaccagcaggtc
ggcctgcgcgccaccggccaggtcatcgtcttcgacggcttcctgaagatctacgaagag
ggccgcgatgatgtcgcggatgacgacgacaatcgcctcccgcagatcatgcagggcgag
aatgctgcttttgccaagtcgggcctcaaggcgcagcacgagaaggcggccgaacgcgcc
accgccgcctccggcgtgtcgtcgatcctgtcggacaacagtgccgtgctgggcactcag
agctttacccagccgccgccgcgctacaccgaggcgacgctggtcaagcggatggaggag
ctcggcatcgggcggccgtcgacctatgcgtcggtgatcaccaccatccaggaccgcgaa
tacgtcaagaaagagcagaaccgcctgatccccgaggacaagggccggatcgtcacgatc
ttcctgctcaacttcttccgcaagtacgtgggctacgagttcaccgccgagctcgagaac
gagctcgacgaggtctcggcgggcgagatggactggaaggcactgctgggcaagttctgg
cgcgacttctcggcggcgatttccgagacctccgagctgcggatctccgaggtgctggac
gtgctcgacgatgcgctggcgccgcagctctacccgccgcgcgaggacggctccgacccg
cgcgtctgccccaagtgcggcaccggccagctgcacctcaagacctcgcgcaccggcggc
ttcgtcggctgcggcaactaccccgaatgcacctacacccgcccgatcgcgggcgagggg
gccgagggcgacgagcggctgcttggcgaggatcagggtgacgagatctggctcaaggcc
gggcgcttcggcccctacgtgcagcgcggcgagccgacccccgagaacaagaagccgccg
cgggcctcgctgccgcgcggctggtccaaggacgagatgacgttggagaaggcgcttgtg
ctgctctcgctgccgcgcgaagtgggcgagcaccccgagggcggcacggtgtcgagcaac
ttcgggcgcttcggcccctacatcatgcaccagctgcccgacgacgcgaagccgacctac
gtcaacctcaaggacccggcggatgtcttcgagatcggcatgaaccgcgcggtcgagatg
ctggccgagaagcgcgccaaccccggcgggcgcggccgtgcggcggccaaggcgctgaaa
gagctgggcgatcacccggacggcggcaagattgccatcttcgacgggcgctacgggcct
tacgtgaaatgggaaaaggtgaacgccaccctgcccaaggatacggaccccgagagcgtc
accatggaacaggcgctcgagtggatcgccgagaaggccgcgaagtccggaaagaagaaa
gccgccccgaaaaaggctgcggcgaagaagacgaccaccaagaagaccacggcgaaaaag
acaaccgcgaagaagacgccggcgaagaagactgcggcgaaagcgggcgacgactga
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