Alloyangia pacifica: CEW88_11425
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Entry
CEW88_11425 CDS
T05431
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ypac
Alloyangia pacifica
Pathway
ypac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEW88_11425 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypac03019
]
CEW88_11425 (pnp)
03016 Transfer RNA biogenesis [BR:
ypac03016
]
CEW88_11425 (pnp)
Enzymes [BR:
ypac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CEW88_11425 (pnp)
Messenger RNA biogenesis [BR:
ypac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CEW88_11425 (pnp)
Transfer RNA biogenesis [BR:
ypac03016
]
Prokaryotic type
tRNA degradation factors
CEW88_11425 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AWI84242
UniProt:
A0A2U8HED5
LinkDB
All DBs
Position
1:complement(2373640..2375781)
Genome browser
AA seq
713 aa
AA seq
DB search
MFNVTTKSMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKEPKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSH
DLVNDPDVVAMIAASAALTISGVPFMGPIAGCRVGYTDGEYVLNPTVDDMQGLRNNPDQR
LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHAQIQPVIDLIIDLAESAAKEPFDFQ
APDYSELFEVVKGLGEAKMKAAYAITDKQARVAAVSAAKEEIKAQLSEEQLEDANLGSAI
KKLESVVLRSDVVKNKRRIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTTLG
TGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
PTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGEYA
VLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKQALAQAKDGRMHILGE
MAKALTEAGDFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKI
ASANGEAIQKAYDMIYSIVAEPEEGAVYKGKVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETGEELAADKKEETAE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacgtaacgacgaaatccatgcagtggggcgaggaaaccctcaccctcgagacc
ggcaaggttgcccgtcaggcagacggcaccgtcatcgccacgctcggcgagacctcggtc
atggccaacgtgaccttcgcgaaggaaccgaagccgggccaggatttcttcccgctgacc
gtccactaccaggaaaaatactatgccgcgggcaaggtgcccggtggcttcttcaagcgc
gaggcgcgtccgaccgagaaagagacgctgaccgcacgcctgatcgaccgtccgatccgt
ccgctcttcgtccccggcttcaagcatgaagtgctggtgatgtgcaccgtgctgtcgcac
gatctggtcaacgaccccgacgtcgtggcgatgatcgccgcctcggccgcgctgaccatc
tcgggcgtgcccttcatgggtccgatcgccggctgccgcgtcggttacaccgatggcgag
tacgtgctgaacccgaccgtcgacgacatgcaggggctgcgcaacaaccccgatcagcgt
ctcgacctcgtcgtcgccggcaccaaggacgccgtgatgatggtggaatcggaagcctac
gagctgaccgaagacgagatgctgggggccgtgacctttgcgcacgcgcagatccagccc
gtcatcgacctgatcatcgatctggccgaatccgccgcgaaagagcctttcgacttccag
gcgcccgactactcggagcttttcgaagtggtgaagggtctgggcgaagccaagatgaag
gccgcctacgcgatcaccgacaaacaggcgcgcgtcgccgccgtgtcggccgccaaggaa
gagatcaaggcacagctgagcgaagagcagctcgaagacgcgaacctcggttcggcgatc
aagaagctcgagtcggtcgtgctgcgctcggacgtggtgaagaacaagcgccgcatcgac
ggccgcgcgctcgaccaggtccgtccgatcgtgtcggaaacctcggtcctgccgcggacc
cacggctcgtcgctgttcacccgtggcgaaacccaggcgctggtcgtgaccacgctgggc
accggcgacgacgagcagatcatcgacgctctgcacggcaacttccgctcgaacttcctg
ctgcactacaacttcccgccgtactcggtgggtgaagtggggcgcgttggctcgccgggt
cgccgtgaaatcggccacggcaagctggcatggcgcgcgctgcaggccgtgctgccggca
ccgaccgacttcccctacaccatccgcgtggtgtccgagatcaccgaatccaacggctcg
tcctcgatggcctccgtctgcggcggctcgctgtcgatgatggatgcaggcgttccgctg
aaggcgccggtggccggtgtggccatgggcctcgtgctggaagacgacggtgagtatgcg
gtgctgaccgacatccttggcgacgaggaccacctcggcgacatggacttcaaggtcgca
ggcaccgagaacggcatcacctcgctgcagatggacatcaaggtcgcgggcatcaccccc
gagatcatgaaacaggcgctggcacaggccaaggacggccggatgcacatcctcggcgag
atggccaaggccctcaccgaagccggcgatttctcggtccacgccccgcgcatcgagacc
atgcagatcccgaccgacaagatccgtgaagtgatcggctcgggcggcaaggtgatccgc
gagatcgtcgaagtgtcgggcgccaaggtcgacatcaacgacgatggcgtgatcaagatc
gcctcggccaacggtgaagccatccagaaggcctatgacatgatctactcgatcgtggca
gagccggaagagggcgccgtctacaagggcaaggtcgtgaagatcgtcgatttcggcgcc
ttcgtgaacttcttcggcaagcgcgacggcctcgtgcacgtcagccagatcgagaaccgc
cgcctgaaccatccgtcggatgtgctgaaggaaggtcaggaagtctacgtgaagctgctt
ggcttcgacgatcgcggcaaggtgcgcctcgccatgaagatggtcgaccaggaaaccggc
gaagagctggcagcggacaagaaggaagagaccgcggagtga
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