Yersinia pseudotuberculosis PB1/+ (serotype 1B): YPTS_0461
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Entry
YPTS_0461 CDS
T00744
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ypb
Yersinia pseudotuberculosis PB1/+ (serotype 1B)
Pathway
ypb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPTS_0461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypb03019
]
YPTS_0461
03016 Transfer RNA biogenesis [BR:
ypb03016
]
YPTS_0461
Enzymes [BR:
ypb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
YPTS_0461
Messenger RNA biogenesis [BR:
ypb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YPTS_0461
Transfer RNA biogenesis [BR:
ypb03016
]
Prokaryotic type
tRNA degradation factors
YPTS_0461
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
HTH_20
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
ACC87447
LinkDB
All DBs
Position
510650..513184
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AA seq
844 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLTGEEPLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIH
GDVVLAQVVGADRKGRREARIVRVLVPKTSQIVGRYFTDAGTGFVVPDDSRLSFDILIPA
EATCGARMGFVVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLKEQVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPQTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQYKPLVPHLEELHAMYKVLDQA
RAERGGIAFETEEAKFIFNAERRIERIEPTVRNDAHKLIEECMILANIAAARFVEKHEEP
ALFRVHDRPSDDHIVALRSVLNELGLTLGGGLKPQPKDYSVLMDEISDRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNLKDRWTPT
GGWHSDFEDMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFTGIIASVTGFGF
FVRLDDLFIDGLVHVSSLDNDYYRYDNIGQHLIGESSGVVYRLGDTVEIRVDAVHMDERK
IDFALVSSTRKPRGEGKTARDKAKNNGQRTLRSNSAGRGSSSGSSRRDGAPTAGGQKRPR
RAKKPVNFEPDSAFRPDAAAAKPDDKALAEKKAKAKAKRASAKTKKIAAATKAKRAKKKT
TSDQ
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagagaaatatgagtcaccaatccctagc
cgggaatttattttggctcatctcgcgaagcgcgagacacctgccagccgtgaagagctg
gccaatgaacttaatttaaccggtgaagagcctttagaggcgctacgccgtcgtttgcgt
gcgatggaacgtgatgggcaattggtcttcacccgtcgtcagtgctacgccttgccagag
cgtctggatttactgcgcggtacggttattggtcaccgtgatggctatggctttttgcgg
gttgaaggcagtaaagatgatctgtatctctccgcagagcagatgaaaatggcgatccat
ggtgatgtcgtcttggcacaagtggtcggggctgatcgtaaaggccgccgtgaagcgcgt
atcgtgcgtgtattggtcccaaaaaccagccagatcgtgggtcgctactttaccgatgca
ggtacgggctttgtcgtgccggatgacagtcgtcttagctttgatatcttgatcccagca
gaggcgacctgtggtgcgcggatgggctttgtggtcgtagtcgaattgactcagcggcca
actcgccgtactaaagcggttggtaagattgttgaagtacttggtgagaatatgggcacc
agcatggcggtggatatcgcattgcggacccatgagatcccgcacacctggccgcctcaa
gttgaaaaacaagtcgcagatctgaaagaacaggtaccggaagaagcgaaaaaggggcgg
gtagatttgcgcgatctgcctctggttacgattgatggtgaagatgcccgcgacttcgat
gatgccgtgtattgcgagaagaaacgtggcggcggttggcggttgtgggtagcgattgcg
gatgtcagttattatgtgcgtcctcaaaccgcattggatgacgaagcccggagccgtggt
aactcggtctacttcccatcgcaagtgataccgatgctgccggaagtgctatcaaacggc
ctttgctcccttaatccacaggtagaccgcctgtgtatggtgtgcgagatgaccatctct
tcgcagggcaaactctcgtcttataagttctacgaagcggtaatgagctcccatgctcgt
ctgacctacactaaggtgtggcggattatagatggtgaggaatcgctgcgtgagcaatat
aagccgctggtgccacatctggaagagctgcacgcgatgtataaagtgctggatcaggcg
cgcgcagagcggggagggattgctttcgaaacagaagaagccaagtttatctttaatgct
gaacggcgcattgaacgtatcgaacccacggtacgtaatgatgcccataagctaattgaa
gagtgcatgattctggcgaatatcgcggcggcgcgttttgtggaaaaacacgaagaaccg
gcgttgttccgagtgcatgatcgcccaagcgatgaccatattgtggcattgcgcagtgtg
ttgaatgagttggggctaacactcgggggcgggctgaagccgcaaccaaaagattattca
gtgttgatggatgaaatttctgatcgccccgatcatgaaatgctgcaaaccatgttgcta
cgctccatgaaacaagcggtttatgatccagaaaaccggggtcactttggtttggcgctg
gcttcttatggccacttcacctcacctattcgtcgttaccctgatttggcgatgcatcgg
gctattaagtatcagttagccaaagagcacggtaatttaaaagatcgctggacacctacg
ggcggctggcacagcgatttcgaagatatgctgcaattgggccaacactgttcgatgacc
gagcgccgagcggatgaagcaacccgcgatgtcgctgactggctgaagtgtgacttcatg
ctagatcaggtcggtaatgtcttcaccggtattattgccagtgtgaccggttttggcttc
ttcgtgcgtctggatgacctctttatcgatggtctggtgcatgtctccagcctggataac
gattactaccgttacgacaacattggtcagcatctgatcggtgaatcttccggtgtagtt
tatcggctgggtgataccgtggagattcgagtcgatgcggttcatatggatgagcgtaaa
attgactttgctctggtctccagtacccgcaagccacgtggtgaaggcaagaccgcccgt
gataaggcgaaaaataacggccagcgtacattacgcagtaattctgcaggtcgtggctct
tcatccggctcatcgcgccgtgatggtgcgccaactgcgggtggacaaaaacgcccacgt
cgggcgaaaaaaccggtaaacttcgagccggacagtgcgttccgtccagatgctgccgcg
gctaagccagacgataaagccttagctgagaagaaagccaaggcgaaggcaaaaagagcc
tcggctaagaccaaaaaaattgctgcggcgaccaaagccaagcgagcaaagaaaaaaacc
actagcgatcagtaa
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