Yersinia pseudotuberculosis PB1/+ (serotype 1B): YPTS_0514
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Entry
YPTS_0514 CDS
T00744
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ypb
Yersinia pseudotuberculosis PB1/+ (serotype 1B)
Pathway
ypb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPTS_0514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypb03019
]
YPTS_0514
03016 Transfer RNA biogenesis [BR:
ypb03016
]
YPTS_0514
Enzymes [BR:
ypb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
YPTS_0514
Messenger RNA biogenesis [BR:
ypb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YPTS_0514
Transfer RNA biogenesis [BR:
ypb03016
]
Prokaryotic type
tRNA degradation factors
YPTS_0514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
aRib
UPF0181
Spt6_S1
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ACC87500
UniProt:
B2K2Q9
LinkDB
All DBs
Position
564496..566610
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AA seq
704 aa
AA seq
DB search
MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV
NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA
GTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNE
ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASV
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASE
FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT
DGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATTPDAEAPEAAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
ttgctgactccgattattcgtaaattccagtatggtcaacataccgtaactatcgaaact
ggtatgatggctcgccaggccactgcagccgtaatggtaagcatggacgacactgcagta
ttcgtgactgttgttggtcaaaagaaagccaaaccaggccagagtttcttccctctgacg
gttaactatcaggagcgtacttacgctgctggccgtatcccaggtagcttcttccgtcgt
gaaggccgcccaagtgaaggcgaaacactgacttcacgtctgatcgaccgcccaattcgc
ccactgttcccagacagcttcctgaacgaagttcaagtgattgcaaccgtcgtttcggtt
aacccacaaattaacccagacatcgtggcactgattggtgcatctgcggcactgagcttg
tcaggcattccatttaacggcccaatcggtgctgctcgcgttggttttatcaacgaccag
tatgtgctgaacccaaccactgacgagctgaaagagagccgtttggatctggttgttgcc
ggtactgcgggtgcagtgctgatggttgaatcagaagccgatattctgtccgaagagcaa
atgttgggcgcggtcgtcttcggccacgaacaacagcaagttgtgattgaaaatattaac
gctttggttgctgaagctggtaaacctaagtgggattggcaggcagagcctgtcaacgaa
gcactgcatgcgcgtgttgctgaactggccgaagcgcgtctgggcgatgcataccgtatc
actgaaaaacaagaacgttatacgcaagttgatgctatcaaagctgacgtgaccgaagcg
ctattagcgcaggacgacacattagatgccgctgaaattcaggatatcctggccagcgtt
gagaaaaatgttgtgcgtagccgtgtgctgcgtggtgagccacgtattgatggtcgcgaa
aaagacatgatccgtggtttggatgtacgtactggcatcttgccacgtactcatggttct
gccttgttcacccgcggtgaaactcaggcgttggttaccgctacgctgggtacggcacgt
gacgcacaaaacattgatgagttgatgggtgagcgcacagattcattcctgttacactat
aatttccctccgtattgtgtaggcgaaacagggatggttggctcacctaagcgtcgtgag
attggccatggccgccttgcgaaacgtggtgttctggctgtgatgccaagtgcgagcgag
ttcccttacactattcgtgtggtttctgaaatcaccgagtctaatggttcttcctcaatg
gcttctgtttgtggtgcttctctggctctgatggatgcgggcgtgccaattaaagccgct
gttgctggtattgcaatgggcctggtaaaagagggtgataactttgtcgttctgtctgac
attctgggtgacgaagatcacttgggcgacatggactttaaagtagccggtagccgtgac
ggtgtgaccgcactgcaaatggacattaaaattgaaggtattacccgcgaaattatgcag
gtagctctgaatcaggctaagggtgcacgtttgcacattctgggcgtgatggaacaggct
atcagcacaccacgtggcgatatctctgagtttgctccacgtatctacaccatgaagatc
aaccctgagaaaatcaaggatgtgatcggtaaaggtggttcggtgatccgtgcgctgact
gatgaaactggcaccacgattgaaatcgaagatgatggtaccattaagattgcagcaact
gatggcgataaagcaaaacacgctatccgtcgtatcgaagagattactgctgaaatcgaa
gtgggccgtatttacgcaggtaaagtcacccgtatcgttgatttcggtgcatttgttgct
atcggtggcggtaaagaaggtctggtacatatttctcaaatcgctgataagcgtgtagag
aaagtgacagactacctgcagatgggtcaagatgtgccagttaaagtaatggaagttgat
cgtcagggccgtatccgcctgagcatcaaagaagccactactcctgacgcagaagcacca
gaagcagcagagtaa
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