Yersinia pseudotuberculosis PB1/+ (serotype 1B): YPTS_1266
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Entry
YPTS_1266 CDS
T00744
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
ypb
Yersinia pseudotuberculosis PB1/+ (serotype 1B)
Pathway
ypb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ypb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YPTS_1266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypb03400
]
YPTS_1266
DNA repair and recombination proteins [BR:
ypb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPTS_1266
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YPTS_1266
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
UB2H
AAA_30
DUF87
SBDS_domain_II
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACC88241
UniProt:
B2K8T5
LinkDB
All DBs
Position
1412444..1414459
Genome browser
AA seq
671 aa
AA seq
DB search
MSKSFKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPT
MILAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQ
YSRNDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPR
FTVYPKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLD
PLIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERGIIPQGLNKKIGDILQLG
QPSMRGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQV
HQLRQQFIAIS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaatcattcaaactgcattctgtgtttaagccagctggcgatcagcctgaggct
atccgtaaattggaggaggggctggaaaatggtctggcacaccagaccctgctaggcgta
acaggatcaggcaaaacctttacggttgctaatgttattgccgatctgaaccggccaacc
atgatcctggccccgaacaaaacactggcagcgcaactttacggcgagatgaaagagttc
ttcccggataacgcggtagagtactttgtctcctactacgattattatcaacctgaagct
tacgtgcccagttctgatacttttattgagaaggatgcgtcggtcaatgaacacatcgag
cagatgcggctatccgccaccaaggccttgttagagcggcgagatgtggtggtcgtggcg
tcggtttccgccatttatggtctgggcgatccagatctgtatctgaaaatgatgttgcac
ctaacccgtggcatgatcattgatcaacgttccattttacgtcgcctgtcagaattgcaa
tacagccgcaacgatcaggtatttcaacgcggtacttttcgggttcggggtgaagtgatc
gatatcttcccggcagaatctgatgagtgggcgctgcgggtagaattatttgatgaggaa
gtcgagcgattatccattttcgatccactcacgggtcagctacagcatgaagtccctcgc
tttactgtttatcctaaaacacattacgtcaccccacgggaacgcattctacaggcgatg
gaagagataaaagtcgagctggcggagcggcgtcaggtgttgttagccaataacaaatta
ttggaagagcaacgtctctcccaacgtactcagtttgatcttgaaatgatgaatgagctg
ggctattgctcgggtatcgaaaactattctcgctatctctctggccgtgggccgggtgaa
gcgcctcccacgttatttgactatttaccggctgatggtttgttgattgtcgatgagtcc
cacgtcactattccgcaaattggtggcatgtacaaaggcgaccgctcacgtaaagaaacc
ctggtagagtacggtttccgtttgccatcggcactggataaccggccaatgcgctttgaa
gagttcgaagcgttggcaccgcaaacgatctatgtttcggccacaccgggcaaatacgag
ctggagaaatctggcggtgacattattgagcaagtggtgcggccaacgggcctactcgat
ccgttgatcgaggtccgtccggtagccacacaagtggatgacttgctgtcagagatccgc
atccgtgctgcgattaacgagcgggtactggtgaccacgctaacgaaacgaatggctgag
gacttaaccgactatctcagcgagcatggcgccaaagtacgttacctgcattcagatatc
gatactgtggagcgggtggagattattcgcgatttacgcttgggtgaatttgatgtgctg
gtgggcatcaacttgctgcgggaagggttggatatgccagaggtctcattggttgccatt
cttgatgcagataaagagggcttcttgcgttctgaacgctccttgattcagactattggt
cgtgctgcccgtaacctcaacggcaaggcgattttatacggcgatagaattaccgcctcg
atggaaaaagccattggcgaaacggaacggcggcgcgctaaacagcaggcgtataatgaa
gaacgcgggattattcctcaggggctaaacaaaaagattggcgatatcctgcaattgggc
cagccttcaatgcgtggcaaaggaaaagggcgcggcagtcataaaatggccgataccacc
caatatcaatctttgtcgccgaaagcacttgatcagaaaatccgtgaactggaagcaaaa
atgtatacatatgcgcaaaacctggagtttgaacaggcggctgaattacgtgatcaggtt
catcaactgcggcaacagtttattgcaatatcttaa
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integrated database retrieval system
