Yersinia pseudotuberculosis PB1/+ (serotype 1B): YPTS_1294
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Entry
YPTS_1294 CDS
T00744
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ypb
Yersinia pseudotuberculosis PB1/+ (serotype 1B)
Pathway
ypb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPTS_1294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypb03019
]
YPTS_1294
Enzymes [BR:
ypb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YPTS_1294
Messenger RNA biogenesis [BR:
ypb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YPTS_1294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
Shikimate_DH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACC88269
LinkDB
All DBs
Position
1444507..1445862
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AA seq
451 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAGRG
DSRNSRPRSQADGQRRPAGPSSRGRSRNPGE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacgccaattcaacgtcaggcaatccctgtagtactggaaggccgcgat
ttgatggccagtgcgcaaacgggtacgggtaaaaccgctggtttcaccttgccgctattg
caactgcttagccaagatcaacaacccattaagggccgccgtccggtacgagcattgatt
ttgacgccaacccgtgagctggccgcgcagattgacgaaaacgtacagagttatagcaaa
tacctgaaacttcgctcactggtggtatttggtggcgttagcattaatccgcagatgatg
aaattgcgtggtggcgtcgatattttagtcgcgacacctggccgtttactggatctggaa
catcaaaacgcggttgatttgtccaaaattgaaattttagtattggacgaagctgaccgt
atgctggatatgggctttattcacgatatccgccgtgtattagccaaattaccggctaaa
cgtcagaatttgctgttctctgccaccttctctgatgagattaaagggctggccagcaaa
ttgttgcacaacccagcctctgttgaagtggctcgccgtaatacggcgtcagagcagatc
gcccaaagcgttcactttgtcgataaaaaccgtaagcgtgagctgttgtctcagatgatt
ggcgaaggtaactggcagcaagtgctggtgtttaaccgcactaagcacggcgcgaaccat
ttagctgaacagttaaataaagacggcattactgcggcggcaatccacggtaataaaagt
cagggcgcacgtactcgtgcactggccgattttaaagacggtaaaatccgtgtgttggtc
gcgacggatatcgctgcccgtggtctggatatcgaccagttacctcacgtggttaactat
gaattgccaaacgttccggaagattacgttcaccgtattggccgtactggccgcgcggaa
cggaccggggaagcgatttcactggtttgtgtcgatgaacataaactgctgcgtgatatt
gaacgtttattaaaacgtgaaattccacgtatcgcacttgatggctatgagccggatcca
agcattaaagctgatccaattcaaaatggccgtcagggccgtggtgcacaacgtccagga
atgggccgtggcagcagcgcgggtcgtccgcagaatgggggcggtgcagcaggtcgcggt
gatagccgcaacagccgcccacgcagccaggctgatggtcaacgccgtccggcaggccca
tcgtctcgcggtcgtagccgtaatccaggcgaataa
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