Yersinia pseudotuberculosis PB1/+ (serotype 1B): YPTS_2568
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Entry
YPTS_2568 CDS
T00744
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ypb
Yersinia pseudotuberculosis PB1/+ (serotype 1B)
Pathway
ypb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPTS_2568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypb03019
]
YPTS_2568
03009 Ribosome biogenesis [BR:
ypb03009
]
YPTS_2568
Enzymes [BR:
ypb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
YPTS_2568
Messenger RNA biogenesis [BR:
ypb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YPTS_2568
Ribosome biogenesis [BR:
ypb03009
]
Prokaryotic type
rRNA processing factors
YPTS_2568
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ACC89528
LinkDB
All DBs
Position
2840049..2843756
Genome browser
AA seq
1235 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
EEAPTVAKAKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASE
NRRNDRRNPRRQNNGRKERNDRTPREGRDNSSRDNTNRDNTNRDNTNRDNTSRDNTNRDN
TSRDNANRDGANRDNSNRDNSGRDNVSREGREDQRRNNRRPAQPTTTSQGQTEVVEADKA
QREEQPQRRGDRQRRRQDEKRQAPQEIKADVAEAPVIEEVQPEQEERQQVMQRRQRRQLN
QKVRIQSANDELNTLESPVSAPVAQVVVAEVQEEVKLLPQITAQTDDDSANERTTNNENG
MPRRSRRSPRHLRVSGQRRRRYRDERYPAQSAMPLAGAFASPEMASGKVWVRYPVTPVVE
QVVVEQVVVEQIAIEQTTTVEQTAIVEQVSVANIVTAQLPVEQVQNTVAEQESSATPSVM
TTPTVAVTLAPQHKPGGSSSSAAAVPGRAPIVAAVPVVAETTAAETVVAKTEAAIDAVAV
VESIAAVETATVEPVVTEEPNVTEPAVAEPAIETDPVEETTSVVEIAPTVESTPMIEDTA
VVVAATVVDTTPETASTVQDDIVEETVVGETAVEAVNISETVAEETAITEPAAEAIATQQ
TTIAQETIAEPTVETAIDVVAVVKQPAVAHPEGVVFKHFASAPMTKAPAPDYAPESPTKG
HWERPTFDFSGKGSAGGHAAATQATAPATKPQSVE
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcgactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggttgtatgatctggatattgaaagcccaggccatgaacagaaaaaagcgaat
atttataaaggtaaaatcacccgaatcgaacctagtctggaagccgcttttgttgattat
ggcgcggaacgacatggtttccttccattaaaagaaatctctcgcgagtacttccccaat
aattactcttcccatggccgcccaaacatcaaagatgtcttgcgtgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggcaataaaggtgctgcattaaccactttcatt
agtctggctggcagctatttggttctgatgccaaacaacccacgtgcgggcggtatttct
cgccgcatcgaaggtgatgaccgcaccgagctgaaagaagccctatcttccctgcaatta
cctgatggcatgggtctgattgttcgtactgcgggtgtgggcaaatctgctgacgcactg
caatgggacttgtcattccgcctgaagcactgggatgcgattaaaaaagcggctgaaggt
cgccccgcacccttcttaatccatcaggaaagtaacgtgatcgtacgtgcttttcgcgat
tacctgcgcccagatatcggcgaaattctgattgacaatccgaaggttctcgaactggca
aaagagcatattgctgcccttggtcgcccggatttcagcagcaaaatcaaattgtatagc
ggtgaaattccgttattcagtcattatcaaattgagtcgcagatcgaatcggccttccaa
cgtgaagtgcgtttgccttctggtggctctatcgttattgacacgaccgaagcactgacg
gcgattgatatcaactcagcccgagccacacgtggtggtgatatcgaagagaccgcgttt
aataccaaccttgaagccgctgacgaaattgctcgccaattacgtttacgtgaccttggt
ggtctgatcgttatcgacttcattgatatgaccccggtacgccatcaacgtgaagttgaa
aaccgtttacgcgatgctgtccgtcaggaccgtgcccgtatccagattggtcgtatctca
cgctttggtttgctggaaatgtcccgtcagcgcctcagcccatcgctgggtgaatccagt
caccacgtctgcccacgctgtagcggtaccggcaccgtacgtgacaatgaatcgctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcac
gccatcgtaccggtacaaatcgcatcgtacctgttgaacgaaaaacgtgaatcagtaaac
gctattgagaagcgtcaaggtggtgtccgtgccgtgatcgtgccaaacgatcagatgcaa
acaccgcactactctgtcctgcgcgtacgcaaaggcgaagaagtcccgtctctcagctat
ctgttgccacaactgcacgaagcagaaatggcgcaaccgctggaagaggccaccattgaa
cgtaagcgcccggaacaaccagcattggctaccttctctctgccaacagaagtgccacca
gaggaggcccctaccgtagccaaggctaaacctgcggttgcaacacccgccgcggttagt
actgacgtagaacaacctggcttctttagccgtttgttcagtggcttaaaaaatatgttt
ggtgcttccgctgaagcagaagtgcaacccgctgaagttgtaaaaaccgacgctagcgaa
aatcgccgtaatgatcgccgcaatcctcgccgccagaataatggccgtaaagagcgcaat
gatcgtactccacgcgaaggtcgtgataattccagccgcgataacaccaaccgtgataac
accaaccgtgataacaccaaccgtgataacaccagtcgtgataacaccaaccgtgataac
accagtcgtgataacgctaaccgcgatggcgctaatcgtgataattccaatcgcgacaac
agtggccgcgataacgttagtcgtgaaggccgcgaagatcaacgccgcaacaacagacgt
ccggcccagccaacgacaacatcgcaagggcaaactgaggttgttgaagccgataaagcg
caacgtgaagaacaaccacagcgccgtggtgaccgtcagcgtcgtcgtcaggatgagaag
cgtcaggcaccacaagaaatcaaagcagatgttgcggaagcccctgttatagaagaggta
caacctgagcaagaagaacgccaacaggttatgcaacgtcgtcagcgtcgccagttgaat
cagaaagtccgtattcaatcggcaaatgatgaactgaatacgttggaatctcctgtcagt
gcacctgttgcgcaggtggtggtggctgaagtacaagaagaagtgaagttactgccacaa
attactgctcaaactgatgatgacagtgctaatgaacgtactaccaataatgaaaatggt
atgccacgtcgttcccgtcgttcaccacgccatctgcgtgttagtggtcaacgccgtcgc
cgttatcgtgatgaacgttacccggcacaatcggccatgcctctggcaggggcttttgcc
tcaccagaaatggcatccggtaaagtgtgggttcgttatccagtgacgccagtcgttgaa
caggttgtcgttgaacaggttgtcgttgaacaaatcgccattgaacaaactacaaccgtt
gagcaaacagccatcgtcgagcaggtcagtgtagcgaatattgtcactgcgcaattgcct
gtagagcaggtgcaaaacaccgttgcagaacaagaatcgagtgcaactccatctgttatg
acaacaccaaccgttgcggtaacactggccccacaacacaaaccggggggttcttcatct
tcggctgctgcggttccaggccgtgcacctatcgttgctgcagtgcctgtcgttgctgaa
acgactgctgctgaaacggttgttgctaaaactgaagccgctattgatgcggtggctgtt
gtggaatcgatagctgctgtggaaactgcaactgtagaaccggttgttacagaagaaccg
aatgtcacagaaccggccgttgccgagccagcgattgaaactgatcctgtcgaagaaaca
acatcagttgtagagattgctccaaccgttgaatcaacgcctatgatcgaagatacggct
gttgtagtcgctgcgacggtggttgacactacaccagaaactgcgtcaaccgtgcaagat
gatattgttgaagagacagtagttggagagacagcagttgaagcggtaaatatctctgaa
actgtggctgaagagaccgcaataacggaacctgctgctgaagccattgctactcagcaa
accactattgcgcaggagaccattgctgaaccaacggttgaaaccgctattgatgtggtt
gcggtagtcaaacaacccgcggttgcgcatccggaaggggtggtgttcaaacacttcgct
tcagcgccaatgaccaaagcgccagcacctgattacgcccctgaatcaccgaccaaaggt
cactgggagcgtccaacctttgatttctcaggcaaaggttctgctgggggtcatgccgcg
gctacccaggcaactgcacccgcgaccaaaccgcaatctgttgagtaa
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