Yersinia pseudotuberculosis PB1/+ (serotype 1B): YPTS_3712
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Entry
YPTS_3712 CDS
T00744
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
ypb
Yersinia pseudotuberculosis PB1/+ (serotype 1B)
Pathway
ypb02020
Two-component system
ypb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ypb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
YPTS_3712
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
YPTS_3712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypb03021
]
YPTS_3712
Transcription machinery [BR:
ypb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YPTS_3712
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ACC90665
LinkDB
All DBs
Position
4133627..4135060
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AA seq
477 aa
AA seq
DB search
MKQGLQLKFSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDLHEEIDAKE
TVDSESLDTREALEQKDMPEELPLDATWDEIYTAGTPSGMGNDYSDDELPVYQGETTQTL
QDYLMWQVDLTPFTETDAAIATSIVDAVDDTGYLTVPLEDILESMGDENVALDEVEAVLK
RIQHFDPIGVAARNLRECLLVQLSQYAKDTPYLAEARLIVSEYLDLLGNHDFRMMIRLSR
LKEDTLKEAIALIQSLDPRPGQSINTGESEYVIPDVLVRKEKGIWTVELNADSIPRLKVN
QQYAAMGNSVRNDSDGQFIRSNLQEAKWLIKSLESRNETLLKVARCIVEQQVEFFEKGAE
FMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAI
RALVKKLVAAENPAKPLSDSKLTTLLCEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtctgcaactcaagttcagccaacaactggcgatgactccgcagcttcag
caagctattcgcttgttgcaactttcgacgcttgaactccagcaggagattcagctcgcg
ctggagagcaacccccttcttgagcaaacggaccttcatgaagagatagatgctaaggaa
accgtggacagtgaatcgctggatacccgcgaagcactagaacaaaaggatatgccggaa
gaattaccgctagatgccacctgggatgagatttacaccgcaggtaccccatccggcatg
ggcaatgattacagtgacgatgaactgcccgtctatcagggtgaaaccacccaaacactg
caagactatctgatgtggcaggtggatttaacaccgttcactgagaccgacgccgccatt
gcgacttctatcgttgacgctgttgatgacactggctatctcactgtgccgctggaagat
attctggaaagcatgggtgatgagaacgtagcgctagacgaagtggaagcggtactcaaa
cgtattcagcattttgatcccatcggtgtcgctgcccgtaacttgcgcgaatgcttactg
gtacagttatcacaatatgccaaagacaccccttatttggccgaagcgcgtctgatcgtc
agcgaatatttagatttgctaggcaaccatgatttccgcatgatgatccgcttgagtcgg
ctgaaagaagatacacttaaagaagccatcgcgctgatccaatcactggatccacggcca
ggtcagtcgatcaataccggggagtctgagtatgtcatcccggatgttctggttcgtaaa
gagaaaggtatctggacggtggagctgaatgccgatagcatcccacgtctaaaagttaac
caacaatacgcagcgatgggcaatagcgtccgtaatgacagtgacgggcagtttattcgt
agcaatttgcaagaagcaaaatggttgatcaaaagccttgaaagccgcaacgaaacgctg
ctaaaagtagcaagatgtattgtagaacagcaagtcgagttctttgagaaaggtgcagag
tttatgaaacccatggtactggctgatatcgcccaggctgtggatatgcatgaatcaaca
atctctcgagtgaccacgcagaaattcttgcacagtccccgagggatttttgaactgaag
tatttcttctctagccacgtcaataccgatagtgggggcgaagcctcttctacggcgatc
cgggcgctggtgaagaaattagtggcggcagaaaaccctgccaagccattaagcgacagt
aaactaaccactttattatgtgaacaaggcattatggtagcacggcgcaccgtcgcaaaa
taccgagagtcgttatccatccctccgtctaatcaacgtaaacagttggtttga
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