Yersinia pseudotuberculosis 1: BZ23_1808
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Entry
BZ23_1808 CDS
T03679
Symbol
hrpA
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ypc
Yersinia pseudotuberculosis 1
Brite
KEGG Orthology (KO) [BR:
ypc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypc03019
]
BZ23_1808 (hrpA)
Enzymes [BR:
ypc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BZ23_1808 (hrpA)
Messenger RNA biogenesis [BR:
ypc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BZ23_1808 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
NACHT
T2SSE
nSTAND3
PhoH
AAA_25
NTPase_1
ResIII
AAA_16
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AJJ69844
LinkDB
All DBs
Position
complement(2021633..2025520)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSSLTALSTQLGELMLRDQQRIQRRLHSARKINNPDAIQAITHEIEAEIAIAMQRVTRR
RAACPAISYPDNLPVSQKKQDIYNAIRDHQVIIVAGETGSGKTTQLPKICLELGRGVKGV
IGHTQPRRLAARTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSQHFNNA
PIIEVSGRTYPVEVRYRPIVDDADDVDRDQLQAIFDAVDELGRESAGDILIFMSGEREIR
DTADALIKQNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQ
LTPLGRQLAQLPVDPRLARMVLQAQKSGCVRELMIITSALSIQDPRERPVDKQQASDEKH
RRFADKDSDFLAFVNLWDYLKEQQKALSSAQFRKLCRSDYLNYLRVREWQDIYTQLRQVV
KELGIPVNSVAADYRSVHTAILTGLLSHIGQKDVEKQEFTGARNARFAIFPGSGLFKKPP
KWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHHYSDPHWEKAQGAVMASEKVTLF
GLPIVTERKINYGPIDPLLCRELFIRHGLVEGDWQTRHAFFRMNLKLLAEVEELEHKSRR
RDILVDDETLFNFYDQRIGRDVISARHFDSWWKQASQTKPELLNFEKTMLIKEGANKVNP
LDYPNFWYQGELKLRLSYQFEPGTDADGVTVHIPLPILNQIHEQGFDWQIPGIRRELVIA
LIKSLPKPVRRNFVPAPNYADAFLARVTPLETGLLEALERELRRMTGVTVSRDSWQLDQV
PDHLKITFRVLDDKNRILREGKDLAALKLQLQEKVQETLSAVADDGIEQNNLHIWSFGDL
PICYEQRRGGYEVKAYPALVDEKDSVAIRLFDTESQQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKSKLGLYFNTYGNVMDLIDDCIACGVDKLVAQHGGPVWQEADFARLQEKVRAEL
NDTVVDIAKQVEQILTLVFSINKRLKGRIDISLALALSDIKAQLAGLIYRGFVTSNGWKR
LPDTLRYLKAIERRLEKLAVDPHRDRAQMLRIEHVQQVWQQWLNKLPPKRQQDEEVKEVR
WMIEELRVSLFAQQLGTPYPVSDKRILQTIEQLSV
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcttcgctcacagcattatccactcaacttggtgagttgatgctccgtgaccaa
cagcgcattcagcgtcggctacatagcgcacgaaaaatcaataaccctgacgccatacag
gcgattactcacgaaattgaagccgaaatcgcgatagcaatgcagcgagtaacccgccgt
cgggcggcttgtccggcgatcagttatccagataatctgcccgtcagccagaagaaacag
gatatttataacgctatccgtgaccatcaggtgatcattgtcgccggtgagactgggtcg
ggtaaaacgacacagttgccgaaaatctgcctggaactggggcggggggtgaaaggcgtt
atcggccacactcagccacgccgtttggccgcacggacggtggctaaccgcattgccgat
gagctggatacttcgcttggcggctgtgttggttacaaagttcgttttaacgatcaggtc
ggtgaaaatacactggtcaaattaatgactgatggcattctgctggctgaaattcagcaa
gatcgcctgctgatgcaatatgacacgttgatcattgatgaggcccacgaacgtagcctt
aacattgattttatcttgggctatttacgtgagttattacctaaacgccctgatctgaaa
gtgatcattacgtcagcgactattgacccgcaacgcttctcacaacatttcaataacgcc
ccaattattgaggtctctggccgtacctacccggtggaggtgcgctaccggccgattgtg
gatgatgccgatgatgttgatcgggaccaattgcaggccatttttgatgcagtcgatgag
ttgggccgtgaaagcgccggggatatcttaatctttatgagcggtgagcgcgaaatccgt
gacacagcggatgcgttgataaagcaaaatttgccacacaccgaagtgctaccgctgtat
gcccgcttatcaaacagtgagcagaaccgggtgtttcagtcacatcatgggcggcgaatt
gtgttggcaaccaacgtggcagaaacgtcactcacggtgccgggtatcaaatatgttatc
gatcccggcacagcacgtatcagccgttacagtttccgtaccaaggtccagcggttaccg
attgagcctatttctcaggcatcggctaatcagcgtaaagggcggtgtggccgtgtctct
gacggtatttgtattcgtctttattccgagcaagattttctctcccgccctgagttcacg
gatccagaaatcctacggaccaatctggcttcggtgatcttgcaaatgacctctctgggg
ctaggggatatcgctgcatttccctttgttgaagcaccggataaacgcaatatccaagac
ggtgtaaggttactggaggaactgggggccattcagaccgccagtaacgggcatcagcaa
ttgaccccattgggccgccagttagcccaacttcctgtcgatccacgcttggccagaatg
gtattgcaagcgcagaaaagtggctgcgtacgtgaattaatgattatcacctcggcgtta
tctattcaggatccgcgtgagcgtccggtagataaacagcaggcctctgatgaaaaacac
cgccgttttgcggataaagattccgattttctcgcctttgttaatctgtgggattatctc
aaagaacaacaaaaagcgttgtcatcagcacaatttcgtaagctttgccgcagcgattac
ctgaattacctacgggtgcgtgaatggcaggatatttacactcagttgcggcaggtcgtt
aaagagttagggatacccgtcaacagtgttgccgcagactaccgcagtgtacataccgcg
atactgaccggtttactttctcacattgggcagaaagatgttgagaagcaagagtttacc
ggtgctcgtaacgcccgctttgctattttccccggctccggcttattcaaaaagcccccc
aagtgggtcatggtggctgaattggtcgagaccagccgtttatgggggcgcattgctgca
cgtattgaacccgaatggattgagcctttagcccagcacctggtgaaacaccattacagc
gatccacattgggagaaagctcagggcgcggtaatggccagcgagaaagtgaccttattc
ggcttaccgattgttacggagcgtaagatcaattacggccctatcgatccactgctctgc
cgtgagttgtttattcgccatgggttggttgaaggtgactggcagacgcggcacgcgttc
ttccgaatgaatcttaagctattggctgaagtggaagagttggaacacaaatcccgtcgg
cgggatattctggtcgatgacgagacactctttaacttttatgatcaaagaattggtcgt
gatgttatctctgcccgccattttgatagctggtggaagcaagcgagccagacgaaaccc
gagctgctgaactttgaaaaaaccatgcttatcaaagagggtgcgaacaaagtaaacccg
cttgattatccgaatttttggtatcaaggggagctaaaactccgtctgtcttatcagttt
gaacccggcaccgatgccgatggtgtcacagtacacattccattacctattctgaaccag
atccatgagcaggggtttgactggcagatcccagggattcgccgcgaactggtgatagca
ctgattaaatcattgcccaaaccggtacggcgtaattttgttccggcacctaattatgcc
gatgcttttctggcacgggtaacaccactcgaaacgggtttattggaggctttggagcgt
gaattacgccgcatgactggcgtgacggtgtcacgtgatagttggcagttagatcaggtg
cctgaccatctgaaaataacgtttcgtgtgctggatgataaaaaccgtattttgcgagaa
ggcaaagatcttgccgccctaaagttacagttgcaagagaaagtacaggaaacactttct
gccgtcgcggatgatggtattgaacaaaataacttacatatctggagttttggcgatctc
cctatctgctatgagcaacggcgcggtggctatgaagtcaaagcctatccagcgttagtg
gatgaaaaagacagtgttgccatccgtttgttcgatacagaatcgcaacaacaacaggct
atgtggcagggtacccggcgtttattgctactcaatattccttcgccgataaaatactta
catgagaaattgccgaataaatccaaactgggtctctatttcaatacgtatggcaacgta
atggatctgattgatgactgcatcgcctgtggcgtcgataaactggtggcacagcatggt
ggcccggtctggcaggaggctgattttgctcgtttacaagaaaaagtccgtgcggaactg
aatgacaccgtggtggatattgccaagcaggttgagcagatcctcacgctggtgttcagt
attaataagcggttgaaaggccggatcgatatttcactggcattggcgctttctgatatt
aaagctcagcttgctggccttatctatcgtggatttgtcacgagtaatggctggaagcgt
ttgcctgatactttacgttatttaaaggctattgagcggcgcttagaaaaactggcggtt
gatcctcatcgcgatagggcgcaaatgctgcgaattgagcatgttcagcaagtatggcaa
cagtggttgaataaattaccgcctaaacgtcagcaagatgaagaggttaaagaagtccgt
tggatgattgaagaactgcgtgtcagtttatttgctcaacaactgggcaccccttatccg
gtgtctgacaaacgtatcttacaaacgatcgaacagctttctgtctga
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integrated database retrieval system
