Yersinia pseudotuberculosis 1: BZ23_2990
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Entry
BZ23_2990 CDS
T03679
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ypc
Yersinia pseudotuberculosis 1
Pathway
ypc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ypc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BZ23_2990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypc03021
]
BZ23_2990 (rpoD)
Transcription machinery [BR:
ypc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BZ23_2990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AJJ69433
LinkDB
All DBs
Position
3418718..3420556
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSTEEMDDEDEDEDEDDDAEDDNSIDPELARQKFSDLREQYENARMEIKKNGRN
HANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKN
FVTLFSSNETSDTWFNAAVAMGKPWSEKLKDVSEDVQRSLQKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDITRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgaggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtactagaagaagcacct
gatgctgatgatttgatgctggccgaaaacaccacggataccgatgatgatgcggctgaa
gctgctgcacaggtgctttccagtgttgaatcagaaatcgggcgaaccaccgacccggtg
cgtatgtatatgcgcgaaatgggtaccgttgagctgttgacacgcgaaggcgagattgat
attgccaaacgtatcgaagacggtatcaatcaggttcagtgttctgttgctgaataccct
gaagcgatcacttatctgttggaacaatatgatcgtgttgaagcgggcgaatctcgttta
tctgacctgatcactggctttgttgatccaaacgccgaagaagatattgccccaacagcg
acccacgttggttctgaattatccactgaagagatggatgacgaagatgaagacgaggat
gaagacgacgacgcagaagacgataacagcatcgatccagagttggcgcgccagaaattc
agcgatttgcgtgagcagtatgaaaacgcgcgtatggaaatcaagaaaaatggccgcaat
cacgcgaatgctgccgctgaaattctgaagctttctgaggtgttcaagcagttccgtctg
gtgccgaagcagttcgattatctggtcaataacatgcgtgccatgatggatcgcgttcgt
actcaagaacgtatcatcatgaagctgtgtgttgagcagtgcaaaatgccgaagaaaaat
ttcgttacgctgttttccagcaatgaaaccagcgacacctggtttaatgcggcagtggcg
atgggtaaaccttggtctgaaaaactgaaagatgtctcggaagatgttcaacgcagcttg
cagaaactgcgccagatcgaagaagaaaccggtctgaccatcgagcaagtaaaagacatc
aaccgccgtatgtctatcggtgaagcgaaagcgcgtcgtgccaagaaagaaatggttgag
gctaacctgcgtttggttatctctattgccaaaaaatacaccaaccgtggtttgcagttc
cttgatttgatccaggaaggcaacattggtctgatgaaagcagtagataagttcgaatac
cgtcgcggttataagttctcaacttacgcaacctggtggattcgtcaggctattactcgt
tcgattgcagaccaggcgcgcactatccgtattccagtgcatatgattgagaccattaac
aaactcaaccgtatctcacgccagatgttgcaagagatgggccgtgagccaacgccagaa
gagttggcggaacggatgttgatgccggaagataagatccgtaaagtgctgaagatagct
aaagagcctatctccatggaaaccccgattggtgatgacgaagattcacatctgggcgat
ttcattgaagataccactctggagctaccgctggactctgcaacttctgagagcctgcgc
tctgccacgcacgatgtgttagctggcctaacagcccgtgaagcgaaagttctgcgtatg
cgtttcggtatcgatatgaacactgaccacacgttggaagaagtgggcaaacagttcgac
atcacccgtgaacgtattcgtcagatcgaggcgaaggcattacgtaaactgcgtcaccca
agccgttctgaagtgctgcgtagcttcctcgacgattaa
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