Yersinia pseudotuberculosis 1: BZ23_4132
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Entry
BZ23_4132 CDS
T03679
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ypc
Yersinia pseudotuberculosis 1
Pathway
ypc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZ23_4132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypc03019
]
BZ23_4132
03009 Ribosome biogenesis [BR:
ypc03009
]
BZ23_4132
Enzymes [BR:
ypc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BZ23_4132
Messenger RNA biogenesis [BR:
ypc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BZ23_4132
Ribosome biogenesis [BR:
ypc03009
]
Prokaryotic type
rRNA helicases
BZ23_4132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_30
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJJ72523
LinkDB
All DBs
Position
4689180..4691174
Genome browser
AA seq
664 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIKADLKSPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVR
FLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NIERTMKLTIPEVELPNADLLSERRLAKFAAKVSQQLESSDLDMYRALLAKLQPEEEFDI
ETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSRSA
DSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA
SHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGGRP
FSGERREGAGAPPRRSFSGDRAPTGGGERRGNRDGQRSAAPRRDDAAAPAAAAAAPARRR
FGDA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctgtccgctccaattctttcc
gctctgactgatcttggttatgaaaaaccatctcctatccagttggaatgtattccacac
ctgttaaacggccgtgatgttctcggtatggcgcaaacaggcagtggcaaaacagccgcg
tttggtctgccgctgttacacaatattaaagctgatctgaagtcgccacaggttctggtg
ttggcaccaacccgtgaattggctgttcaggttgctgaagcgctgtccagtttctctaaa
cacattaatggcgtcaacgtggtggccctgtacggcggtcagcgttatgacgttcaatta
cgcgctttgcgccaggggccacaagttgttgttggtaccccaggtcgtctgttagaccac
ctgaaacgcggtacccttaacctgtccaacctgagcggtttagtgttggatgaagcagat
gaaatgctgcgcatgggctttatcgaagacgttgaaacgattatggcgcagatcccggct
gaacatcagaccgcgttgttctctgcaaccatgccagaagcgattcgtcgtattacgcgt
cgcttcatgaaagaaccacaggaagtccgcattcaatctagcgtgacgacccgccctgac
attagccagagctactggagagtgggtggcggttaccgtaaaaatgaagcgctggtacgt
ttcctggaagctgaagatttcgatgctgctattattttcgtacgtaccaaaaatgcgacc
ttggaagtagcagaagcccttgagcgtagcggctacaacagcgcggcactgaatggtgat
atgaatcaggcactgcgtgagcagacgctggagcgtttgaaagatggccgtctggatatt
ctgattgcaactgacgtagctgcccgtggcttggacgttgagcgtatcagcttggtcgta
aactatgatatccctatggattcagagtcttatgttcaccgtatcggtcgtactggccgt
gcaggtcgtgcaggtcgcgcgttgctgttcgttgagaaccgtgaacgtcgtctgttgcag
aacatcgaacgcacgatgaagctgacgatcccagaagttgagttgccaaacgcagatttg
ctgagcgaacgtcgtttagctaaattcgccgctaaggttagccaacaactggaaagcagt
gatttggatatgtaccgcgcattgctggctaagctgcaaccggaagaagagtttgatatc
gagactctggctgctgcactgctgaaaatggcgcagggcgaacgtcctctgatcctgcca
ccagaagccccacgccgtccgcagcgtgaattcaattcacgtgatgaccgtggtaacgat
cgtggtagccgtgatcgtggtgacagccgtcgcgataaccgctctgacagccgttctgct
gatagccgtgatggtggtgagcgtcctgctcgtcgtgaacgtcgtgatgttggcgagatg
gagctgtaccgcattgaagtgggccgtgatgatggtgttgaagttcgccatattgttggc
gctatcgctaacgaaggtgatatcagcagccgttatatcggtaatatcaagttgtttgct
tcccactcaacgattgaactgccaaaaggcatgccgggcgaaatgttatctcacttcacc
cgtacccgtatcctgaacaagccgctgaacatgcagctgttgggtgatgcacagccacat
gaacgccgtgagcgtccagcgggtggtaacggtggtgagcgtcgtggcggtggccgtcca
ttcagtggcgaacgtcgtgaaggcgcaggcgctcctcctcgtcgttcatttagcggcgat
cgtgctcctaccggtggtggtgagcgtcgtggtaaccgcgatggtcagcgttctgcggcc
ccacgtcgtgatgatgctgccgcacctgctgctgcagccgccgcaccagcccgtcgtcgc
ttcggtgatgcataa
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