Yersinia pestis D106004: YPD4_0368
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Entry
YPD4_0368 CDS
T01832
Symbol
holD
Name
(GenBank) DNA polymerase III subunit psi
KO
K02344
DNA polymerase III subunit psi [EC:
2.7.7.7
]
Organism
ypd
Yersinia pestis D106004
Pathway
ypd03030
DNA replication
ypd03430
Mismatch repair
ypd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPD4_0368 (holD)
03430 Mismatch repair
YPD4_0368 (holD)
03440 Homologous recombination
YPD4_0368 (holD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypd03032
]
YPD4_0368 (holD)
03400 DNA repair and recombination proteins [BR:
ypd03400
]
YPD4_0368 (holD)
Enzymes [BR:
ypd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YPD4_0368 (holD)
DNA replication proteins [BR:
ypd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YPD4_0368 (holD)
DNA repair and recombination proteins [BR:
ypd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YPD4_0368 (holD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_III_psi
Phage_TAC_6
CSTF_C
Motif
Other DBs
NCBI-ProteinID:
ACY57277
LinkDB
All DBs
Position
444506..444943
Genome browser
AA seq
145 aa
AA seq
DB search
MASRRDLLLQQLGITQWVLRRPAVLQGEIAIHLPEDTRLLIVAQQLPEHGDPLLCDVLRS
LGLTPHQVYALTPDQVAMLPEDTQCNSWRLGISEPLAVAGAQLHSPELAGLYQDAGAKRA
LWQQICHYEADFYPDASRSGHSIPN
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaagacgagacttgctgttacagcagcttggcattacgcagtgggtattgcgc
cgtcctgccgtcttgcagggtgagattgcaatacatttacctgaagatacccgcctactg
attgtggcacagcaactgcctgaacacggtgatccactgttgtgcgatgtgctacgcagt
ttgggcctaaccccccatcaggtttatgccttgacgccggatcaggtcgcgatgttgccg
gaagatacgcagtgcaacagttggcgattgggcatcagtgagccgcttgcggtggccggt
gcacaattacatagcccagaattagctgggctttatcaagatgcgggcgctaagcgcgca
ctttggcagcagatttgtcattatgaagcagatttctatcctgacgccagccgatctggc
cacagcataccaaattga
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