Yersinia pestis D106004: YPD4_0885
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Entry
YPD4_0885 CDS
T01832
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ypd
Yersinia pestis D106004
Pathway
ypd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
YPD4_0885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypd03400
]
YPD4_0885
Enzymes [BR:
ypd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
YPD4_0885
DNA repair and recombination proteins [BR:
ypd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YPD4_0885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
vWA-TerF-like
DUF6259
Motif
Other DBs
NCBI-ProteinID:
ACY57794
LinkDB
All DBs
Position
1147484..1149142
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AA seq
552 aa
AA seq
DB search
MVTFTEAATEELRGRIRDNIHGLRIACVRGVSDDPMYQALLAEITDWAVAAAQLLAAERQ
MDEAAIYTIHGFCQRMLANNAFESGILFEQTLVQDELPLWRQACADFWRRHCYPLPLVIA
RAVSQEWSGPEALLSDLSAYLQGETPKFRQAPGDDETILSRHQHVVTQIDALKAEWRLAA
PELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPKELEKFRQSVLLEKTKK
GAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSVQQEKRQRAELGFDDLLSKLDAA
LQQSGGELLAQSIRTRYPVAMIDEFQDTDPQQYRIFHTVYGGQEACALLLIGDPKQAIYA
FRGADIFTYIRARSEVSAHYTLETNWRSSFPMVQSVNRLFSLVNTPFLFEQIPFINVAAA
KKNHDLSFEIKGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELL
TTKGPKPVQASDITILVRSRAEAALIRDALSALAIPSVYLSNRDSVFETTEAKDLLWFTA
SRVSTRAGARTT
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtggtgacctttactgaagccgcgaccgaagagctcagggggcgaattcgcgataatatt
catgggttgcgtatcgcttgcgttcggggagtcagtgatgacccaatgtaccaggctcta
ttagccgaaatcaccgattgggccgtagccgccgcgcaattattggcggctgagcgtcag
atggatgaagccgcgatttacactattcatggtttctgccaaagaatgctggcaaataac
gcttttgaatccggcattttattcgaacaaacgttagttcaggatgaactcccgttatgg
cggcaggcctgtgctgacttctggcggcgtcattgttatccgcttcccttagtcatcgca
cgggcggtcagtcaggagtggagcgggccggaggcattactcagtgatctgagtgcttat
ttacaaggtgaaacgccaaagtttcggcaagcgcccggtgacgatgaaacgatccttagc
cgccatcagcacgttgtgacacagattgatgcacttaaagcagagtggcgcttagccgcc
cctgaattagaagcattaattagtcgttctggcgttgataaacgcagttatagcagcaag
cacttacccaactggctggaaaaagtaggattatgggcggagcaggaaacggaagattat
caattacccaaagaactggaaaaatttcgccagtcggtgttattggaaaagaccaagaag
ggagccgccccacaacatactttatttagtgcgatagactcgatatttgaacagccccta
acgttgagggatcttattttagcccgagccatcagcgaaatacggttttctgtacagcag
gaaaaacggcagcgtgcagagctggggtttgatgatttactcagtaagttagatgccgca
ttacaacaatcggggggtgagttgctcgcccaatctattcgtacccgttatcccgttgca
atgattgatgaatttcaggataccgacccgcaacaataccgcattttccacaccgtttat
ggcgggcaagaagcgtgcgctttactgttgatcggtgatcctaaacaggctatttatgct
tttcgtggcgcagatatatttacctatattcgcgcccgttcagaagtaagcgcccactac
acattggaaaccaactggcgctcttcttttcccatggtgcaatcagtgaacaggctattt
agtctggttaatacgcctttcttatttgagcaaatcccctttattaatgtcgccgccgcc
aaaaagaatcatgatttatcctttgaaattaaaggagaaaagcaacctgcgctacatttt
tggctgcaacccggtgacggtgttggtgtaagtgagtaccaacaagtaatggctagacaa
tgtgcagcgcaaattcgtgattggttgactgccggccagcaggggcaagcagaactactg
accacgaaaggaccaaaaccggttcaggcatcagatataaccatactggtgcgtagccgg
gcagaggccgcattgatacgtgatgcacttagtgcgctggcgatcccatcggtctattta
tctaatcgtgacagtgtctttgagactacagaagccaaagatctcttgtggtttactgca
agccgtgttagcaccagagcaggagcgcgcactacgtag
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