Yersinia pestis D106004: YPD4_0886
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Entry
YPD4_0886 CDS
T01832
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ypd
Yersinia pestis D106004
Pathway
ypd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
YPD4_0886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypd03400
]
YPD4_0886
Enzymes [BR:
ypd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
YPD4_0886
DNA repair and recombination proteins [BR:
ypd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YPD4_0886
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD_C_2
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ACY57795
LinkDB
All DBs
Position
1149147..1150964
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AA seq
605 aa
AA seq
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MATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQRRGVLPMLREMMARRHLAENLL
ATPGGERRLTDLLHLGELLQEAASQLDSEHALIRWLAQQIAQPNPQSDSQQLRLESDRHL
VRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLYHDRHSFEALLDLNADEESQALAEEERL
AEDLRLLYVALTRSVYHCSVGIAPLIKGGRKKQGESDMHRSALGYLVQHGQPGDAHVLSE
KLTELARSSNGDICVSPVEPPDDKPWQPQPEALPELTARHFTRKMQDYWRVTSYSGLQQS
GSTKKLYGSATGDVSQALGAPLQVLLPRLDIDAVGEQAVVTEDDHLTPHTFPRGAAPGTF
LHDLLEPLDFSQPIELAWLSERLQQQGFSEQWAPVLHQWLNDIVQTPLTDTGATLAGLSP
ERKQAELQFYLPIDSLLRAEVLDRLIKQYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQG
QYYLLDYKSNWLGEDSRAYTVEAMTQAMAEHRYDLQYQLYTLALHRYLRHRLADYDYQRH
FGGVIYLFLRGVDQQHSGHGIFNCRPEQKLIEEMDRLFSGTIGSNATASDKSGSNVIHSG
ERASR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggctacggggatcttggggttggatgccagaatgttggatgcgttaaatcacgatgag
cgagcttgggatgcgctggtcgatgagtttgatcactatcgccagcattggcagcgccgt
ggggtattacccatgctgcgggagatgatggcccgccgccatttagctgaaaacttgttg
gcaacacccggtggggagcgtcggctgacagatttactacatcttggggaattactgcaa
gaggccgcctcgcaactggatagtgagcacgcactaattcgctggttggcccagcaaatt
gctcaacccaatccccagtcagatagccaacaattacgcttggaaagtgatcgccatttg
gttcgagtggttactatccataaatcgaaagggttggaatatccattagtttggctgcct
tttatcggtaattttcggcaacaacagaatgtgctttaccatgaccgacatagctttgag
gctttactcgatcttaatgctgatgaagaaagccaggctttagctgaagaagaacgtctg
gctgaggatttacggctattgtatgtcgcgttgacgcgttcggtttatcattgcagcgtg
ggcattgcaccgctgattaaaggggggaggaaaaagcaaggcgagagtgatatgcatcgc
agtgcgttaggttatttggttcagcatggtcaacccggtgatgctcatgttctaagcgaa
aagttaactgagttagcgcgctcatcgaatggtgatatttgcgtttcgcccgttgagcct
cctgatgataaaccttggcaaccacagcccgaagccttgcctgaacttaccgcccgccat
tttactcgaaaaatgcaagattattggcgcgtaaccagctattcaggtttacagcagtct
ggctctacaaagaagctgtatggttctgcaacaggggacgtatcgcaggctctgggggca
ccattacaggtcttgttgccacggttggacattgatgccgtaggtgagcaggcggtggtg
acagaagacgatcatttaacacctcataccttccctcggggagcggccccagggactttc
ttacatgatttgcttgagccattagattttagtcaaccgattgaattggcgtggttgtct
gagcggctacagcaacagggttttagcgaacagtgggcaccggtgttacaccagtggcta
aatgatatagtgcaaacgccgcttaccgataccggggccactttggctgggttgtcgcca
gagcgcaaacaggccgagctacaattttatctacccatcgatagcctgctacgggccgag
gtattagaccgtttaatcaaacagtatgatccactttcccggcagtgccctgtattggat
tttcaacaggttagagggatgctcaaggggtttattgacttggttttttgctggcagggg
caatattacttgctggattacaaatccaattggttgggtgaggacagtcgtgcttatacc
gttgaggcgatgacacaagcgatggctgaacatcgctatgatctgcaataccaactttat
actttggctttacaccgctatttacgccatcgtttggccgattatgactatcaacgccac
tttggtggggttatttacctcttcttgcgcggcgttgatcagcaacattcagggcacggt
atttttaattgccggcctgaacagaaactgattgaagaaatggatcgcttattcagtggc
acaattggcagtaacgcaaccgcgagtgacaaaagcggtagcaatgtcattcacagcggc
gagagggcatcacgatga
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