Yersinia pestis D106004: YPD4_1007
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Entry
YPD4_1007 CDS
T01832
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ypd
Yersinia pestis D106004
Pathway
ypd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ypd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YPD4_1007 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypd03400
]
YPD4_1007 (uvrB)
DNA repair and recombination proteins [BR:
ypd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPD4_1007 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YPD4_1007 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
UB2H
AAA_30
SBDS_domain_II
DUF87
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACY57916
LinkDB
All DBs
Position
1294003..1296018
Genome browser
AA seq
671 aa
AA seq
DB search
MSKSFKLHSVFKPAGDQPEAIRKLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPT
MILAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQ
YSRNDQVFQRGTFRVRGEVIDIFPAESDEWALRVELFDEEVERLSIFDPLTGQLQHEVPR
FTVYPKTHYVTPRERILQAMEEIKVELAERRQVLLANNKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSGGDIIEQVVRPTGLLD
PLIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTDYLSEHGAKVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITASMEKAIGETERRRAKQQAYNEERRIIPQGLNKKIGDILQLG
QPSMRGKGKGRGSHKMADTTQYQSLSPKALDQKIRELEAKMYTYAQNLEFEQAAELRDQV
HQLRQQFIAIS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaatcattcaaactgcattctgtgtttaagccagctggcgatcagcctgaggct
atccgtaaattggaggaggggctggaaaatggtctggcacaccagaccctgctaggcgta
acaggatcaggcaaaacctttacggttgctaatgttattgccgatctgaaccggccaacc
atgatcctggccccgaacaaaacactggcagcgcaactttacggcgagatgaaagagttc
ttcccggataacgcggtagagtactttgtctcctactacgattattatcaacctgaagct
tacgtgcccagttctgatacttttattgagaaggatgcgtcggtcaatgaacacatcgag
cagatgcggctatccgccaccaaggccttgttagagcggcgagatgtggtggtcgtggcg
tcggtttccgccatttatggtctgggcgatccagatctgtatctgaaaatgatgttgcac
ctaacccgtggcatgatcattgatcaacgttccattttacgtcgcctgtcagaattgcaa
tacagccgcaacgatcaggtatttcaacgcggtacttttcgggttcggggtgaagtgatc
gatatcttcccggcagaatctgatgagtgggcgctgcgggtagaattatttgatgaggaa
gtcgagcgattatccattttcgatccactcacgggtcagctacagcatgaagtccctcgc
tttactgtttatcctaaaacacactacgtcaccccacgggaacgcattctacaggcgatg
gaagagataaaagtcgagctggcggagcggcgtcaggtgttgttagccaataacaaatta
ttggaagagcaacgtctctcccaacgtactcagtttgatcttgaaatgatgaatgagctg
ggctattgctcgggtatcgaaaactattctcgctatctctctggccgtgggccgggtgaa
gcgcctcccacgttatttgactatttaccggctgatggtttgttgattgtcgatgagtcc
cacgtcactattccgcaaattggtggcatgtacaaaggcgaccgctcacgtaaagaaacc
ctggtagagtacggtttccgtttgccatcggcactggataaccggccaatgcgctttgaa
gagttcgaagcgttggcaccgcaaacgatctatgtttcggccacaccgggcaaatacgag
ctggagaaatctggcggtgacattattgagcaagtggtgcggccaacgggcctactcgat
ccgttgatcgaggtccgtccggtagccacacaagtggatgacttgctgtcagagatccgc
atccgtgctgcgattaacgagcgggtactggtgaccacgctaacgaaacggatggccgag
gacttaaccgactatctcagcgagcatggcgccaaagtacgttacctgcattcagatatc
gatactgtggagcgggtggagattattcgcgatttacgcttgggtgaatttgatgtgctg
gtgggcatcaacttgctgcgggaagggttggatatgccagaggtctcattggttgccatt
cttgatgcagataaagagggcttcttgcgttctgaacgctccttgattcagactattggt
cgtgctgcccgtaacctcaacggcaaggcgattttatacggcgatagaattaccgcctcg
atggaaaaagccattggcgaaacggaacggcggcgcgctaaacagcaggcgtataatgaa
gaacgcaggattattcctcaggggctaaacaaaaagattggcgatatcctgcaattgggc
cagccttcaatgcgcggcaaaggaaaagggcgcggcagtcataaaatggccgataccacc
caatatcaatctttgtcgccgaaagcacttgatcagaaaatccgtgaactggaagcaaaa
atgtatacatatgcgcaaaacctggagtttgaacaggcggctgaattacgtgatcaggtt
catcaactgcggcaacagtttattgcaatatcttaa
DBGET
integrated database retrieval system
