Yersinia pestis D106004: YPD4_1835
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Entry
YPD4_1835 CDS
T01832
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ypd
Yersinia pestis D106004
Brite
KEGG Orthology (KO) [BR:
ypd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ypd03016
]
YPD4_1835 (rnd)
Enzymes [BR:
ypd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
YPD4_1835 (rnd)
Transfer RNA biogenesis [BR:
ypd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
YPD4_1835 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACY58743
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All DBs
Position
2353243..2354364
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AA seq
373 aa
AA seq
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MNYQLITTNNALQQVCEQARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPI
TEWQPFRALLQDLNVVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFSGRSLSCGFAM
LVAEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAK
DECLLLCRRRSETLDPELAYREITNAWQLRGHQLACLQKLAEWRLRQARERDLAVNFVVR
EEHLWQVARYQPTSLGELDSLGLSGQEIRYHGRTLLALVAEGNAVPEDQLPPPIANLIDQ
PGYKKVFKDIKALIQSVSERSGLSSELLASRRQINQLLNWHWKLKLSDAQPELLTGWRGD
LLSSELLEILQHY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacgaccaataacgcattgcaacaggtctgcgaacaagcccgg
acacatgctcacatcgcgttggatacagagtttgtcagaacgcgcacttactaccctcag
ttgggtttgattcaactgtatgatggtgaacaactctcacttatagatccattacctatc
acggaatggcagccttttcgcgcgttactgcaagatctgaatgtggtgaaatatttacac
gcaggcagtgaagatctcgaagtgtttttaaacgcttttgaccagatgccaaccccgatg
attgatactcaggtattagcggcattttctggccgtagcctatcctgcggctttgccatg
ctggtggctgagtttgaaggtgttgagttagataaaagtgaatcacgtacagactggatt
gcccggccgttgagtgaaaaacagtgcgattatgcggcggctgatgtgttttatctttta
cctctggcggctaaattagtcgaagccactgaggcggcagggcggatggacgcggcgaaa
gacgaatgtctattgctgtgccgccgtcggagtgagacgctcgatcctgaactggcttac
cgtgagattaccaatgcctggcaactccgtggccatcaactggcatgtttgcagaaatta
gccgaatggcgtttacgtcaggcacgggagcgggatttggcggttaactttgtggttagg
gaagagcacctgtggcaagttgcccgctatcaaccaacatcactcggtgagttagattct
cttggcttgagtgggcaggagatccgctatcacgggcgaacattgctggcactggtcgcc
gaagggaatgccgtccctgaagatcagcttcctcccccgattgctaacttgattgaccaa
ccggggtacaaaaaagtctttaaagatattaaagccttgattcaatcggtcagtgaacgt
agcggattaagcagtgaattactggcatcacgtcgccaaattaatcagttactcaattgg
cactggaagttgaagctttcagatgctcaacctgaattattaacaggctggcgtggcgat
ttattgtcttctgaattgcttgaaatcttacaacactattaa
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