Yersinia pestis D106004: YPD4_1949
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Entry
YPD4_1949 CDS
T01832
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ypd
Yersinia pestis D106004
Brite
KEGG Orthology (KO) [BR:
ypd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypd03032
]
YPD4_1949 (topA)
03400 DNA repair and recombination proteins [BR:
ypd03400
]
YPD4_1949 (topA)
Enzymes [BR:
ypd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
YPD4_1949 (topA)
DNA replication proteins [BR:
ypd03032
]
Prokaryotic type
DNA Topoisomerases
YPD4_1949 (topA)
DNA repair and recombination proteins [BR:
ypd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
YPD4_1949 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ACY58856
LinkDB
All DBs
Position
2487932..2490547
Genome browser
AA seq
871 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSANSAEEKAKKDDK
PKKKVKKDEKVALVNRMGVDPYHGWKAQYEILSGKEKVVAELKALAENADHIYLATDLDR
EGEAIAWHLREVIGGDDKRFSRVVFNEITKNAIQQAFNQPGELNISRVNAQQARRFMDRV
VGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREKEIKAFVPEEYWELHADLVAKGDIPI
QMEVTHAHGKPFKPVNREQTHAALTLLENARYKVLDREDKPTSSKPSAPFITSTLQQAAS
TRLSFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMVRGYIGDNFGDKYLPATPNQ
YSSKENSQEAHEAIRPSDVNVLAEQLKDMEADAQRLYQLIWRQFVACQMPPAKYDSTTLT
VQAGDFQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPVIEVGSDLDLQKLIPSQHFTKPP
ARYSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENF
RELMNYDFTARMESGLDQVANDQAEWKAVLDGFFAEFSEQLEKAEKDPEEGGMRPNQMVM
TSIDCPTCGRQMGIRTASTGVFLGCSGYALPPKERCKTTINLVPDAEILNILEGDDAETN
ALRARRRCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEAGEFRIKGYEGPIVECEKC
GSEMHLKMGRFGKYMGCTNDECKNTRKILRSGEVAPPKEDPVPLLELPCEKSDAYFVLRD
GAAGVFLAANTFPKSRETRAPLVEELVRFKDRLPEKLRYLADAPVVDKEGNKTLVRFSRK
TKQQYVSSEKDGKATGWSAFYIDGKWVEAKK
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatac
ttagggaatgattacgtggttaagtccagcgtcggtcacattcgtgatttgccgaccagt
ggctcagccagtaaaaagagcgctaactcagctgaagaaaaagccaaaaaagacgataaa
cccaaaaagaaagtgaagaaagacgaaaaggttgccttagtcaaccgtatgggggtcgat
ccttatcatggctggaaagcgcagtatgaaattttgtctggcaaagagaaagtggttgcc
gagctgaaagcattagcagaaaacgcggatcatatctatctcgcaaccgaccttgatcgc
gaaggtgaggctattgcctggcatttgcgggaagtgatcggtggggacgataaacgtttt
agccgcgttgtctttaacgaaatcaccaagaatgcgattcagcaggcgtttaatcagcct
ggtgaactgaacatcagccgtgtaaatgcacaacaagcccggcgttttatggatcgggtt
gttggctatatggtctctccactgttgtggaagaaaattgcccgtggcctgtcagctggc
cgtgtacagtcagttgctgtgcgccttgtggttgaacgtgaaaaagagattaaagcattc
gttcctgaagaatattgggagctacatgcagatttagtggctaaaggtgacattccgatt
caaatggaagtcactcatgcccatggcaagccatttaaaccggtaaatcgtgagcaaaca
catgcagcgctgacgttactggaaaatgcccgttataaggtgttggatcgtgaagataaa
ccgaccagcagtaagcccagcgcacccttcattacctccaccttacagcaggcggcaagt
acccgtctgagttttggtgtgaaaaaaaccatgatgatggcacagcgcctgtatgaagcg
ggtcatatcacctacatgcgtaccgactcgactaatttgagtcaggatgcattgacgatg
gtacgtggttatatcggcgataattttggtgataagtatctgcctgcaacgcctaaccaa
tacagcagcaaagagaattcgcaggaagcgcatgaggccatccgcccttcagatgtcaat
gtgttagctgagcagttgaaagatatggaagcggatgcccagaggttgtaccaattgatt
tggcgtcagtttgtggcgtgccagatgcctccggccaagtatgactcgaccacactgaca
gtgcaggcgggggatttccaactgcgcgccaaaggccgcacattgcgctttgatggttgg
accaaggttatgcctgcgctgcgtaaaggtgatgaagatcgcaccttgccggtgattgaa
gtgggcagtgatttagacttacaaaaactgattccgagccagcattttaccaagccaccg
gctcgttatagtgaagcatcattagtgaaagagctggaaaaacggggtattggccgtcca
tcgacttatgcctctattatttcgaccattcaagatcgtggctatgtgcgggtagaaaac
cgtcgcttctacgcagagaaaatgggtgaaattgtgacagaccgcttggaagaaaacttc
cgcgagctgatgaattacgatttcacggcacgaatggaaagcggtttggatcaagtcgcc
aatgatcaggccgaatggaaagcggtgctggatggcttctttgctgaattcagcgagcag
cttgaaaaggcagaaaaagatcctgaagaaggaggaatgcgcccgaatcagatggtgatg
accagcattgattgcccaacctgtggccgtcagatggggatccgtactgcgagtactggg
gtgttccttggctgttccggttatgcattgccgcctaaagagcgctgtaaaaccaccatt
aacttggtgccggacgctgagattttgaatattctggagggtgatgatgcggagactaac
gcattacgtgcccgccgccgttgccagaaatgtggtactgcgatggatagctaccttatc
gataatcaacgcaagttacatgtttgcgggaataacccagcgtgtgatggctatgaaatc
gaagcaggtgagttccggataaaaggctatgaaggcccaattgttgagtgcgagaaatgt
ggttctgaaatgcacctgaaaatggggcgcttcggtaagtacatgggctgcaccaatgac
gagtgtaagaatacccgcaagattctgcgtagcggtgaagttgcaccaccgaaagaagat
ccggtaccattgttagagttgccttgcgagaaatcagatgcttatttcgtcctacgagat
ggcgcagctggcgtgttcttggcagccaatacattccctaaatcgcgtgaaacccgtgca
ccgctggtagaagaattggttcgctttaaagaccgtttgcctgagaagttgcgttatctg
gctgatgcccctgtggttgataaagagggtaataaaaccctggtccgtttcagccgtaaa
acgaagcaacagtatgtttcatcagagaaagatggcaaagcaacaggctggtctgctttc
tatattgatggtaaatgggttgaggcaaagaaataa
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