Yersinia pestis D106004: YPD4_2138
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Entry
YPD4_2138 CDS
T01832
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ypd
Yersinia pestis D106004
Pathway
ypd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPD4_2138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypd03019
]
YPD4_2138
03009 Ribosome biogenesis [BR:
ypd03009
]
YPD4_2138
Enzymes [BR:
ypd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
YPD4_2138
Messenger RNA biogenesis [BR:
ypd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YPD4_2138
Ribosome biogenesis [BR:
ypd03009
]
Prokaryotic type
rRNA processing factors
YPD4_2138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Extensin_1
Motif
Other DBs
NCBI-ProteinID:
ACY59045
LinkDB
All DBs
Position
2736947..2740603
Genome browser
AA seq
1218 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADALQWD
LSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELAKEH
IAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRL
RDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI
LRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPH
YSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPPEEA
PTVAKAKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDTSENRR
NDRRNPRRQNNGRKERNDRTPREGRDNSSRDNTNRDNTNRDNTSRDNANRDGANRDNSNR
DNSGRDNVSREGREDQRRNNRRPAQPTTTSQGQTEVVEADKAQREEQPQRRGDRQRRRQD
EKRQAPQEIKADVAEAPVIEEVQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNTLESP
VSAPVAQVVVAEVQEEVKLLPQITAQTDDDSANERTTNNENGMPRRSRRSPRHLRVSGQR
RRRYRDERYPAQSAMPLAGAFASPEMASGKVWVRYPVTPVVEQVVVEQIAIEQTTTVEQT
AIVEQVSVANIVTAQLPVEQVQNTVAEQESSATPSVMTTPTVAVATAAVTLAPQHKPGGS
SSSAAAVPGRAPIVAAVPVVAETTAAETVVAKTEAAIDAVAVVEPMAAVESIAAVETATV
EPVVTEEPNVTEPAVAEPAIETDPVEETTSVVEIAPTVEPTPMIEDTAVVVAATVVDTTP
ETASTVQDDIVEETAVEAVNISETVAEETAITEPAAEAIATQQTTIAQETIAEPTVETAI
DVVAVVKQPAVAHPEGVVFKHFASAPMTKAPAPDYAPESPTKGHWERPTFDFSGKGSAGG
HAAATQATAPATKPQSVE
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgttgattaacgcgactcagcaagaagagttgcgtgttgcccttgtagatggacagcgg
ctgtatgatctggatattgaaagcccaggccatgaacagaaaaaagcgaatatttataaa
ggtaaaatcacccgaatcgaacctagtctggaagccgcttttgttgattatggcgcggaa
cgacatggtttccttccattaaaagaaatctctcgcgagtacttccccaataattactct
tcccatggccgcccaaacatcaaagatgtcttgcgtgaaggccaggaagttattgttcag
gttgataaagaagaacgcggcaataaaggtgctgcattgaccactttcattagtctggct
ggcagctatttggttctgatgccaaacaacccacgtgcgggcggtatttctcgccgcatc
gaaggtgatgaccgcaccgagctgaaagaagccctatcttccctgcaattacctgatggc
atgggtctgattgttcgtactgcgggtgtgggcaaatctgctgacgcactgcaatgggat
ttgtcattccgcctgaagcactgggatgcgattaaaaaagcggctgaaggtcgccccgcg
cccttcttaatccatcaggaaagtaacgtgatcgtccgtgctttccgcgattacctgcgc
ccagatatcggcgaaatcctgattgataatccgaaggttctcgaactggcaaaagagcat
attgctgcccttggtcgcccggatttcagcagcaaaatcaaattgtatagcggtgaaatt
ccgttattcagtcattatcaaattgagtcgcagatcgaatcggccttccaacgtgaagtg
cgtttgccttctggtggctctatcgttattgacacgaccgaagcactgacggcgattgat
atcaactcagcccgagccacacgtggtggtgatatcgaagagaccgcgtttaataccaac
cttgaagccgctgacgaaattgctcgccaattacgtttacgtgaccttggtggtctgatc
gttatcgacttcattgatatgaccccggtacgccatcaacgtgaagttgaaaaccgttta
cgcgatgctgtccgtcaggaccgtgcccgtatccagattggtcgtatctcacgctttggt
ttgctggaaatgtcccgtcagcgcctcagcccatcgctgggtgaatccagtcaccacgtc
tgcccacgctgtagcggtaccggcaccgtacgtgacaatgaatcgctgtcactttctatt
ctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcacgccatcgta
ccggtacaaatcgcatcgtacctgttgaacgaaaaacgtgaatcagtaaacgctattgag
aagcgtcaaggtggggtccgtgccgtgatcgtgccaaacgatcagatgcaaacaccgcac
tactctgtcctgcgcgtacgcaaaggcgaagaagtcccgtctctcagctatctgttgcca
caactgcacgaagcagaaatggcgcaaccgctggaagaggccaccattgaacgtaagcgc
ccagaacaaccagcattggctaccttctctctgccaacagaagtgccaccagaggaggcc
cctaccgtagccaaggctaaacctgcggttgcaacacccgccgcggttagtactgacgta
gaacaacctggcttctttagccgtttgttcagtggcttaaaaaatatgtttggtgcttcc
gctgaagcagaagtgcaacccgctgaagttgtaaaaaccgacactagcgaaaatcgccgt
aatgatcgccgcaatcctcgccgccagaataatggccgtaaagagcgcaatgatcgtact
ccacgcgaaggtcgtgataattccagccgcgataacaccaaccgtgataacaccaaccgt
gataacaccagtcgtgataacgctaaccgcgatggcgctaatcgtgataattccaatcgc
gacaacagtggccgcgataacgttagtcgtgaaggccgcgaagatcaacgccgcaacaac
agacgtccggcccagccaacgacaacatcgcaagggcaaactgaggttgttgaagccgat
aaagcgcaacgtgaagaacaaccacagcgccgtggtgaccgtcagcgtcgtcgtcaggat
gagaagcgtcaggcaccacaagaaatcaaagcagatgttgcggaagcccctgttatagaa
gaggtacaacctgagcaagaagaacgccaacaggttatgcaacgtcgtcagcgtcgccag
ttgaatcagaaagtccgtattcaatcggcaaatgatgagctgaatacgttggaatctcct
gtcagtgcacctgttgcgcaggtggtggtggctgaagtacaagaagaagtgaagttactg
ccacaaattactgctcaaactgatgatgacagtgctaatgaacgtactaccaataatgaa
aatggtatgccacgtcgttcccgtcgttcaccacgccatctgcgtgttagtggtcaacgc
cgtcgccgttatcgtgatgaacgttacccggcacaatcggccatgcctctggcaggggct
tttgcctcaccagaaatggcatccggtaaagtgtgggttcgttatccagtgacgccagtc
gttgaacaggttgtcgttgaacaaatcgccattgaacaaactacaaccgttgagcaaaca
gccatcgtcgagcaggtcagtgtagcgaatattgtcactgcgcaattgcctgtagagcag
gtgcaaaacaccgttgcagaacaagaatcgagtgcaactccatctgttatgacaacacca
accgttgcggttgccaccgcagcggtaacactggccccacaacacaaaccggggggttct
tcatcttcggctgctgcggttccaggccgtgcacctatcgttgctgcagtgcctgtcgtt
gctgaaacgactgctgctgaaacggttgttgctaaaactgaagccgctattgatgcggtg
gctgttgtggaaccgatggctgctgtggaatcgatagctgctgtggaaactgcaactgta
gaaccggttgttacagaagaaccgaatgtcacagaaccggccgttgccgagccagcgatt
gaaactgatcctgtcgaagaaacaacatcagttgtagagattgctccaaccgttgaacca
acgcctatgatcgaagatacggctgttgtagtcgctgcgacggtggttgacactacacca
gaaactgcgtcaaccgtgcaagatgatattgttgaagagacagcagttgaagcggtaaat
atctctgaaactgtggctgaagagaccgcaataacggaacctgctgctgaagccattgct
actcagcaaaccactattgcgcaggagaccattgctgaaccaacggttgaaaccgctatt
gatgtggttgcggtagtcaaacaacccgcggttgcgcatccggaaggggtggtgttcaaa
cacttcgcttcagcgccaatgaccaaagcgccagcacctgattacgcccctgaatcaccg
accaaaggtcactgggagcgtccaacctttgatttctcaggcaaaggttctgctgggggt
catgccgcggctacccaggcaactgcacccgcgaccaaaccgcaatctgttgagtaa
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