Yersinia pestis D106004: YPD4_3415
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Entry
YPD4_3415 CDS
T01832
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ypd
Yersinia pestis D106004
Pathway
ypd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPD4_3415 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypd03019
]
YPD4_3415 (rhlB)
Enzymes [BR:
ypd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YPD4_3415 (rhlB)
Messenger RNA biogenesis [BR:
ypd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YPD4_3415 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
ACY60319
LinkDB
All DBs
Position
4330786..4332057
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AA seq
423 aa
AA seq
DB search
MTEQKFSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLA
STFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYD
KQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRR
MPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMR
LLQTLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKG
DLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYA
LNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAPRNNRK
RPG
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
ttgactgaacagaagttttccgacttcgccctgcacccgctagttgttgaagcccttgaa
aacaaagggtttcagtattgcacgccgattcaggcgttagcattgccactcaccctctct
gggcgtgatgtagcaggtcaggcgcaaaccggtacaggcaagacgctggcattcttggcg
tctactttccattatttgctttctcacccagcagaagagggtcgccagactaatcaacca
cgcgcattaattatggcaccaacgcgcgaattagccgtgcaaattcactccgatgcagaa
tcactttcccaggtaaccgggctgaagttaggtctggcttatggtggggatggctacgat
aaacagcttaaagtgctggaaagtggcgttgatatcttgatcggtacaacaggccgttta
atcgattacgcgaaacaaaattatattaacctcggtgcgattcaagtcgtggtattggat
gaagcggatcgcatgtacgatctaggctttattaaagatatccgctggctgttccgccgt
atgccttccgttgataaacgtttaaatatgctgttttctgccactctctcgtatcgggta
cgtgaattggcattcgaacaaatgaataatgcagaatatgttgaagtggaaccgttacaa
aaaaccggtcaccgcatcaaagaagagctgttctatccttcaaatgaagaaaaaatgcgt
ctgttacagacgttaattgaagaagaatggcctgatcgctgtattatttttgctaatacc
aaacaccgttgtgaagagatctgggggcatttggctgctgatggtcaccgcgtcggttta
ttgacgggtgatgttgctcagaaaaaacgcctgcgtattctcgaagatttcaccaagggc
gatttggatattctggttgccaccgatgttgctgcccgtggtttacacattccattagtg
acccacgtcttcaactatgacctgccagatgactgtgaagattacgttcaccgcattggc
cgtactggccgtgctggcgagagtggtcactccatcagtctggcctgcgaagagtatgca
ttaaacttgccagcgattgagacctatacgggccatagcatcccggtaagcaaatataac
agtgacgcgctattaactgatctaccagcgcctaaacgcctagcccgtacccgcaccggg
aatggcccacgccgtaattctgccccacgccgcagtggagcaccacggaataaccgtaag
cgaccaggctga
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