Yersinia pestis CO92 (biovar Orientalis): YPO0517
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Entry
YPO0517 CDS
T00063
Symbol
hepA
Name
(GenBank) RNA polymerase associated helicase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ype
Yersinia pestis CO92 (biovar Orientalis)
Brite
KEGG Orthology (KO) [BR:
ype00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ype03021
]
YPO0517 (hepA)
Transcription machinery [BR:
ype03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
YPO0517 (hepA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Cas3-like_C_2
COG2_N
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAL19198
UniProt:
Q8ZII0
LinkDB
All DBs
Position
complement(556946..559852)
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDVRMITLLFPATGENRLYARNDSPITRVMFNPSDT
ITHHEGWQLKVEEVTQENGLITYIGTRLDTEETGVAMREVLLDSKLTFSKPQDRLFAGQI
DRMDRFALRFRARKYQSEQFRLPWSGLRGIRASLIPHQLHIAYEVGQRHAPRVLLADEVG
LGKTIEAGMIIHQQLLAGRAERVLIVVPESLQHQWLVEMLRRFNLRFSLFDDSRYSEALL
DSSNPFDTEQMVICSLDFVRRNKQRLEQLADASWDLLVVDEAHHMAWSEEAPSREYQVIE
QLAEHIPGVLLLTATPEQLGQQSHFARLRLLDPDRFHDYEEFVNEQQKYRPIADAVTLLL
GGERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHGTSRVLFRN
TRNGVKGFPHRVLHQIKLPLPTQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQEFEGE
NATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREAIRAAVFHEGLSL
IERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI
GQNREIQIMVPYLEDTAQAILVRWYHEGLDAFEHTCPTGRTIYDSSYQELISYLATPSEQ
EGLDEFIHTCRQQHEGLKLQLEQGRDRLLEMHSNGGEHGQELAQSIAEQDNDINLVSFAL
NLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPPDGCTVTFDREQALSREDAQFVSWE
HPIIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTP
VRMLMDRNGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQQEVHTMLQQAEALVEAQAQ
ALIETAKREADDKLSTELARLEALKAVNPNIRDDEIEALEHNRKMVLENLNQAGWRLDAI
RLVVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgacacagaaagcgaacttggattgggt
actgtcgttgccattgacgtgcgcatgatcaccttactgttccctgcaaccggtgaaaac
cgcctttacgccagaaatgactcgccaatcacccgggtcatgttcaatccgagcgatacc
atcactcaccacgaaggctggcagctgaaagtggaagaagtgactcaagaaaatgggctg
attacctatatcggtacccgtttggatactgaggaaaccggcgtcgccatgcgtgaagtt
ttgctcgatagcaaactgacttttagtaaaccacaggatcgcttattcgccggtcaaatc
gatcgcatggatcgctttgccctgcgttttcgcgcccgtaaataccaaagcgagcagttc
cggttgccgtggagcggcctgcgtggtatccgtgccagcctgatcccacaccagttacat
atcgcttatgaagtgggtcagcgccacgcgccacgggtcttactggccgatgaagtgggg
ttgggtaaaaccatcgaagccgggatgattatccaccagcaactgctggctggccgtgct
gaacgggtgctgatcgtggtaccggagagcctgcaacaccagtggctagtagagatgtta
cgccgcttcaacctgcgcttctcactgtttgatgacagccgttattccgaagccttgttg
gacagtagcaatccgtttgataccgaacagatggtgatttgttcgctggattttgttcgt
cggaataagcagcggttagaacaactggccgatgcttcctgggatctgctggtggtggat
gaagcgcaccatatggcctggagtgaagaggctccaagccgcgaatatcaagtgattgaa
cagttggccgagcatatccccggcgtgctgttattgacagcaacaccagagcaattgggc
caacagagtcactttgcccgcctgcgtttgctggatccagatcgcttccatgattacgaa
gagttcgtcaatgaacaacagaaataccggcctatcgccgatgccgtcaccctgctgtta
gggggcgagcgtttaaccgatgataagctgaatctgttaggtgaactgattgatgaacaa
gatattgagccactactgaaagcggccaatagccaaagtgaagacagcgaagcggcgcgt
caagaattagttaccatgctgatggataggcacggtactagccgggtgctgttccgtaat
acccgtaatggggtaaaaggcttcccgcaccgcgtcttacaccaaattaagctgccattg
ccaacacagtaccaaactgcaattaaggtctctggcatcatgggggcgaagaaaaccctc
gacgctcgtgcaaaagatatgctttatcccgagcaaatctatcaggagtttgaaggcgaa
aacgccacctggtggaactttgacccacgggttgaatggctactgaactatttggttgcc
aaccggggtgagaaggtgttggtgatctgcgcacaagccgctacagctttgcagcttgaa
caagtgttacgtgagcgtgaagctattcgggccgccgtcttccatgaaggtttatcgctg
attgaacgtgaccgtgccgccgcctattttgcctcagaagaagatggtgctcaggtctta
ctgtgttccgaaattggttcagaggggcgtaacttccaatttgcctgccaactggtcatg
ttcgatttgccgttcaaccccgatctcctggagcaacgtattggccgtttggatcgtatc
ggccagaaccgtgaaatccagattatggtgccttatttggaagacaccgcgcaggcaata
ctggttcgttggtaccacgaagggttggatgcgttcgaacacacctgcccaacaggccgt
accatttatgacagcagctatcaggaactgattagctatttggccacgccaagtgagcag
gaagggttggatgagtttatccacacctgccgtcagcagcacgaagggttaaaacttcag
ttggaacagggccgtgaccgcttactggagatgcactctaacggtggcgaacatgggcag
gagctggcacagagcattgccgaacaagataatgacatcaatttagtcagttttgcactc
aacctgttcgatattgtcgggatcaaccaggaagatcgtagcgataacctgatcgtgctg
accccgtccgatcacatgctggtgcccgatttccccggtttgccaccagatggctgcacc
gtcacctttgatcgtgaacaggcactctcgcgggaagatgcccagtttgtcagttgggaa
caccccatcatccgcaatgggttggatttgatcctgtctggcgataccggcagttgcgcg
gtgtctttattgaaaaataaagccttacccgtcggtaccctgctggctgagttagtttac
gtggtcgaggcacaagcaccgaaacacttgcaactgacccgtttcttgccaccaacaccc
gtgcgtatgctcatggatcgcaacggcactaacctggcggcacaggttgaatttgaaagt
ttcaatcgccaactgaatgcggtaaaccgccatacctccagcaagctggtcaatgcggtt
cagcaagaagttcacaccatgttgcaacaagccgaagcactggtagaagcgcaagcgcag
gctctgattgaaacggcaaaacgcgaggccgatgataagttgagtactgaactggcgcgt
ctggaagcgttgaaagcggttaacccgaatattcgtgatgacgaaatagaggcgcttgag
cataaccgtaagatggtgctggaaaacctgaatcaagcaggctggcgtttagatgctatc
cggctggtggtggtaacacatcagtag
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