Yersinia pestis CO92 (biovar Orientalis): YPO3394
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Entry
YPO3394 CDS
T00063
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ype
Yersinia pestis CO92 (biovar Orientalis)
Brite
KEGG Orthology (KO) [BR:
ype00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ype03019
]
YPO3394 (hrpB)
Enzymes [BR:
ype01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
YPO3394 (hrpB)
Messenger RNA biogenesis [BR:
ype03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
YPO3394 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
HA2_N
AAA_22
ResIII
DUF2934
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAL21983
UniProt:
Q0WBQ2
LinkDB
All DBs
Position
complement(3790984..3793470)
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AA seq
828 aa
AA seq
DB search
MSERKNDVAIAALPVSEVLDELLSALQSSSQVLLHAPTGAGKSTWLPLQILQQSQFLNSG
SPGRIIMLEPRRLAAKNVAYRLAQQLGELPGQTVGYRMRAESKIGPDTRLEVVTEGILTR
MLQQDAELQGVSLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNQRLSA
LLPSAPAIVSAGRSFPVERSYQPLSSHERLEEGVASRVKRLLNEQPGSLLLFLPGVSEIH
RVMERLHGEVASDTDLCPLYGALPLSEQQKAIQPAAIGRRKVVLATNIAETSLTIEGIRL
VVDSGLERVARFDIKNGLTRLVTQRISQASMVQRAGRAGRLEPGICWHLFAKEQAERAAE
YSEPEILNSDLCGLWLELLSWGCQDAAQLCWLDHPPAAALAVARDLLGRLDAIDDQGQLT
ATGRTMATLGCEPRLAAMLCFGAGHSPDALATAALLAAILEEPPRSGQIDLHDWLSRPQP
HWQRRARQLTQRLNARGGSVDHALAAQLLALAYPDRIAQQRGQDGRYLLANGMGAAMAQD
EALSRSPWLVAVGLLQNHSGPDARILLALPVDIEQLVTCLPRQVEERTVVEWDDEKGTLR
AWRRWQIGRLILRAQPLAKPDDAALQQALLNWVREQGLQILNWDEPAEQLRTRLQCAARW
LPEAPWPAVDDDSLQDKLALWLQPSLSGVRDLRGLRQVNIAEALTRLLDWKQRQRLDTEL
PTHYTVPTGSRLPIRYYVDRPPVLAVRLQEVFGEQQSPMLASGRVAVVLELLSPAHRPLQ
ITGDLAAFWQGAYREVQKEMKGRYPKHVWPDDPAHTRPTRRTKKYQDK
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgagagaaaaaatgatgttgcgatagcggcgttaccggtgagtgaagtgctcgac
gagttgctatctgcattgcaatcctcatcgcaagtcctgcttcatgccccgaccggtgcc
ggtaaatctacctggctgccgctacaaatcttgcaacaaagtcagtttcttaatagcggg
tcaccgggccgcatcattatgctggagccacggcgactggcggcaaaaaatgtggcttac
cgtttggcgcaacaattgggtgaattgcccggccagacagtaggttaccggatgcgcgca
gaaagcaagatcgggccggatacgcgtctggaagtggtgaccgaaggtattttgactcgg
atgctacaacaggatgccgagcttcagggcgtgtcattggtgatccttgatgaattccac
gaacgcagtctgcaagcagatttggcgctagcgttattgctggatgtgcaacaggggctg
cgcgatgatctgaaactattaatcatgtcagccacgctggataaccagcgcctttctgct
ttgttaccctccgctccggccattgtctcggctgggcgcagtttcccggttgaacgcagt
tatcagccgctctccagccatgaacggttggaagagggggttgccagccgcgttaaacgc
ttgctaaatgaacagcccggttccttgttgctgtttttaccgggtgtcagtgaaatccat
cgagtgatggaacggctgcatggcgaggtcgccagcgataccgatttgtgcccgctgtac
ggtgctttgccactcagtgaacagcaaaaagcgattcaaccggccgctatcgggcgacgt
aaagtggtgctggcaaccaatattgccgaaaccagtttgaccattgagggcatccggttg
gtggttgatagcgggctggaacgggttgcgcgttttgatatcaaaaacggtctgactcgc
ttggtcactcagcgtatcagtcaggcgtcaatggtccagcgcgcaggccgtgccgggcgg
ctagaaccgggtatctgttggcatctgtttgccaaagagcaggccgaacgggcggcggaa
tacagtgaaccggaaatactgaacagcgatttatgcggtctgtggttggaattactgagt
tggggatgtcaggatgcggcgcaactctgttggctcgatcaccccccggcagcggcactg
gctgtggcccgtgatttattagggcgattggatgccattgatgaccaagggcagttgacg
gccacggggcgcaccatggcaacgctgggctgcgaacctcgattggcggccatgttgtgc
tttggggcggggcatagccccgatgcactggctacggctgcgttgttggcggctattttg
gaagagccacctcgctctggccaaatagatttacatgactggctcagccggccgcagcct
cactggcaacggcgcgccagacaactgacacaaaggcttaacgcgcgcggaggcagtgta
gaccatgcgctggccgcacaattgctggcgctggcttatccggataggatcgcacagcag
cgggggcaggatgggcgctacctgctggctaacggcatgggggctgccatggcgcaggat
gaggcgctatcgcgatccccctggctagtggcggttgggctactgcaaaaccacagcggg
ccggatgcacgtattttgctggccttgcccgttgacatcgaacagttggtgacgtgtctg
ccgcggcaagtggaagagcgcacggtggtggagtgggatgatgaaaaaggtacgctgcga
gcctggcggcgctggcaaattgggcgtttgatcctgcgggcgcagccattggctaaaccg
gatgacgcggcattgcagcaggccttgctaaactgggttcgggagcaaggattacagata
cttaactgggatgaacctgccgagcagctacgtacccgcttacaatgtgctgcccgttgg
ttgccagaggcgccatggcctgcggtcgatgacgacagtttgcaggataaactggcgctc
tggttgcagccgtcattatccggtgttcgtgatctacgtgggcttcggcaggtgaatatt
gctgaagccttaacccgcttgttagattggaaacaacgccaacggctggataccgaactg
ccaactcattacactgtgcccactggcagtcgcctgccaatacgttattatgtcgaccgg
ccgccggtgttggcggtacgtttgcaggaggtttttggtgaacagcaaagccctatgctg
gcgagcgggcgggttgcggtggtgcttgaactgctttctcccgcccatcggccattacag
attaccggcgatttagcggcattctggcagggggcgtatcgtgaggtgcaaaaagagatg
aaagggcgttaccccaaacatgtctggcctgatgacccggcacatacccggccaacccgc
agaaccaaaaaatatcaagataagtga
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