Yersinia pseudotuberculosis PA3606: BZ19_1841
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Entry
BZ19_1841 CDS
T03846
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ypf
Yersinia pseudotuberculosis PA3606
Pathway
ypf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZ19_1841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypf03019
]
BZ19_1841
03009 Ribosome biogenesis [BR:
ypf03009
]
BZ19_1841
Enzymes [BR:
ypf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BZ19_1841
Messenger RNA biogenesis [BR:
ypf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BZ19_1841
Ribosome biogenesis [BR:
ypf03009
]
Prokaryotic type
rRNA processing factors
BZ19_1841
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJK18081
LinkDB
All DBs
Position
2050104..2053754
Genome browser
AA seq
1216 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
EEAPTVAKAKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASE
NRRNDRRNPRRQNNGRKERNDRTPREGRDNSSRDNTNRDNTSRDNANRDGANRDNSNRDN
SGRDNVSREGREDQRRNNRRPAQPTTTSQGQTEVVEADKAQREEQPQRRGDRQRRRQDEK
RQAPQEIKADVAEAPVIEEVQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNTLESPVS
APVAQVVVAEVQEEVKLLPQITAQTDDDSANERTTNNENGMPRRSRRSPRHLRVSGQRRR
RYRDERYPAQSAMPLAGAFASPEMASGKVWVRYPVTPVVEQVVVEQVVVEQIAIEQTTTV
EQTAIVEQVSVANIVTAQLPVEQVQNTVAEQESSATPSVMTTPTVAVTLAPQHKPGGSSS
SAAAVPGRAPIVAAVPVVAETTAAETVVAKTEAAIDAVAVVEPMAAVESIAAVETATVEP
VVTEEPNVTEPAVAEPAIETDPVEETTSVVEIAPTVESTPMIEDTAVVVAATVVDTTPET
ASTVQDDIVEETAVEAVNISETVAEETAITEPAAEAIATQQTTIAQETIAEPTVETAIDV
VAVVKQPAVAHPEGVVFKHFASAPMTKAPAPDYAPESPTKGHWERPTFDFSGKGSAGGHA
AATQATAPATKPQSVE
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcgactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatctggatattgaaagcccaggccatgaacagaaaaaagcgaat
atttataaaggtaaaatcacccgaatcgaacctagtctggaagccgcttttgttgattat
ggcgcggaacgacatggtttccttccattaaaagaaatctctcgcgagtacttccccaat
aattactcttcccatggccgcccaaacatcaaagatgtcttgcgtgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggcaataaaggtgctgcattaaccactttcatt
agtctggctggcagctatttggttctgatgccaaacaacccacgtgcgggcggtatttct
cgccgcatcgaaggtgatgaccgcaccgagctgaaagaagccctatcttccctgcaatta
cctgatggcatgggtctgattgttcgtactgcgggtgtgggcaaatctgctgacgcactg
caatgggatttgtcattccgcctgaagcactgggatgcgattaaaaaagcggctgaaggt
cgccccgcgcccttcttaatccatcaggaaagtaacgtgatcgtccgtgcttttcgcgat
tacctgcgcccagacatcggcgaaatcctgattgataatccgaaggttctcgaactggca
aaagagcatattgctgcccttggtcgcccggatttcagcagcaaaataaaattgtatagc
ggtgaaattccgttattcagtcattaccaaattgagtcgcagatcgaatctgccttccaa
cgtgaagtgcgtttgccgtctggtggctctatcgttattgacacgaccgaagcactgacg
gcgattgatatcaactcagcccgagccacgcgtggtggtgatatcgaagagaccgcgttt
aataccaaccttgaagccgctgacgaaattgctcgccaattacgtttacgtgaccttggt
ggtctgatcgttatcgacttcattgatatgaccccggtacgccatcaacgtgaagttgaa
aaccgtttacgcgatgctgtccgtcaggaccgtgcccgtatccagattggtcgtatctca
cgctttggtttgctggaaatgtcccgtcagcgcctcagcccatcgctgggtgaatccagt
caccacgtctgcccacgctgtagcggtaccggcaccgtacgtgacaatgaatcgctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcac
gccatcgtaccggtacaaatcgcatcgtacctgttgaacgaaaaacgtgaatcagtaaac
gctattgagaagcgtcaaggtggtgtccgtgccgtgatcgtgccaaacgatcagatgcaa
acaccgcactactctgtcctgcgcgtacgcaaaggcgaagaagtcccgtctctcagctat
ctgttgccacaactgcacgaagcagaaatggcgcaaccgctggaagaggccaccattgaa
cgtaagcgcccggaacaaccagcattggctaccttctctctgccaacagaagtgccacca
gaggaggcccctaccgtagccaaggctaaacctgcggttgcaacacccgccgcggttagt
actgacgtagaacaacctggcttctttagccgtttgttcagtggcttaaaaaatatgttt
ggtgcttccgctgaagcagaagtgcaacccgctgaagttgtaaaaaccgacgctagcgaa
aatcgccgtaatgatcgccgcaatcctcgccgccagaataatggccgtaaagagcgcaat
gatcgtactccacgcgaaggtcgtgataattccagccgcgataacaccaaccgtgataac
accagtcgtgataacgctaaccgcgatggcgctaatcgtgataattccaatcgcgacaac
agtggccgcgataacgttagtcgtgaaggccgcgaagatcaacgccgcaacaacagacgt
ccggcccagccaacgacaacatcgcaagggcaaactgaggttgttgaagccgataaagcg
caacgtgaagaacaaccacagcgccgtggtgaccgtcagcgtcgtcgtcaggatgagaag
cgtcaggcaccacaagaaatcaaagcagatgttgcggaagcccctgttatagaagaggta
caacctgagcaagaagaacgccaacaggttatgcaacgtcgtcagcgtcgccagttgaat
cagaaagtccgtattcaatcggcaaatgatgaactgaatacgttggaatctcctgtcagt
gcacctgttgcgcaggtggtggtggctgaagtacaagaagaagtgaagttactgccacaa
attactgctcaaactgatgatgacagtgctaatgaacgtactaccaataatgaaaatggt
atgccacgtcgttcccgtcgttcaccacgccatctgcgtgttagtggtcaacgccgtcgc
cgttatcgtgatgaacgttacccggcacaatcggccatgcctctggcaggggcttttgcc
tcaccagaaatggcatccggtaaagtgtgggttcgttatccagtgacgccagtcgttgaa
caggttgtcgttgaacaggttgtcgttgaacaaatcgccattgaacaaactacaaccgtt
gagcaaacagccatcgtcgagcaggtcagtgtagcgaatattgtcactgcgcaattgcct
gtagagcaggtacaaaacaccgttgcagaacaagaatcgagtgcaactccatctgttatg
acaacaccaaccgttgcggtaacactggccccacaacacaaaccggggggttcttcatct
tcggctgctgcggttccaggccgtgcacctatcgttgctgcagtgcctgtcgttgctgaa
acgactgctgctgaaacggttgttgctaaaactgaagccgctattgatgcggtggctgtt
gtggaaccgatggctgctgtggaatcgatagctgctgtggaaactgcaactgtagaaccg
gttgttacagaagaaccgaatgtcacagaaccggccgttgccgagccagcgattgaaact
gatcctgtcgaagaaacaacatcagttgtagagattgctccaaccgttgaatcaacgcct
atgatcgaagatacggctgttgtagtcgctgcgacggtggttgacactacaccagaaact
gcgtcaaccgtgcaagatgatattgttgaagagacagcagttgaagcggtaaatatctct
gaaactgtggctgaagagaccgcaataacggaacctgctgctgaagccattgctactcag
caaaccactattgcgcaggagaccattgctgaaccaacggttgaaaccgctattgatgtg
gttgcggtagtcaaacaacccgcggttgcgcatccggaaggggtggtgttcaaacacttc
gcttcagcgccaatgaccaaagcgccagcacctgattacgcccctgaatcaccgaccaaa
ggtcactgggagcgtccaacctttgatttctcaggcaaaggttctgctgggggtcatgcc
gcggctacccaggcaactgcacccgcgaccaaaccgcaatctgttgagtaa
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