Yersinia pseudotuberculosis PA3606: BZ19_2405
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Entry
BZ19_2405 CDS
T03846
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ypf
Yersinia pseudotuberculosis PA3606
Pathway
ypf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ypf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BZ19_2405 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypf03400
]
BZ19_2405 (recD)
Enzymes [BR:
ypf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BZ19_2405 (recD)
DNA repair and recombination proteins [BR:
ypf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BZ19_2405 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
UvrD-helicase
AAA_22
SLFN-g3_helicase
PhoH
AAA_16
nSTAND3
AAA_28
CbiA
T2SSE
MukB
UvrD_C
Flavi_DEAD
MeaB
TrwB_AAD_bind
FtsK_SpoIIIE
DEAD
SRP54
AAA
Motif
Other DBs
NCBI-ProteinID:
AJK14726
LinkDB
All DBs
Position
complement(2690820..2692793)
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AA seq
657 aa
AA seq
DB search
MMTLLAQAARDRLLRPLDVQFSRMIAGDDDPRLQLAAAILSAEVGAGHVCLPLRYLQPEL
LFGGRQPDLSLALWQAAGSPDKAQWLQALQNAPVVSDGSQPTPLVLQQERLYLQRMWQYE
GDVVQFIASDSVFINRDSDFMTSKGIATSVDESLLRETLDALFGYAGSEVDWQKVAAAVA
ATRRISVISGGPGTGKTTTVAKLLTALIRISQGQRLRIQLAAPTGKAAARLTESLGKAIR
QFSLTDDERKLFPDQASTLHRLLGVQPNSQRLRYHRGNPLNLDVLVVDEASMVDLPMMAR
LIAALPAKAKVIFLGDRDQLASVEAGAVLGDICRFAELGYSEQRAQQLTQLTGYLLTNNA
LTSNVLASNVLTNKALANKAQPDETYSDSANVRDSLCLLRKSYRFDEKSGIGQLALAVNA
GEYRQALSVLNSAYSDVERFPLADEEDYQVLLEACAVGYQHYLERVAALAPAAEVLAAFG
RYQLLCALRSGPFGVSGLNERIEQVLHRKGFIIRPSGPSGRWYVGRPVMIELNDSALGLF
NGDIGIALHDNEGELRVYFQLPDGNIKSVQPSRLPSHETAYAMTVHKSQGSEFEHTALVL
PNTFMPVLTRELVYTAITRARQHLTLYCSDAVLSHAIRTPTLRLSGLVDRLNTLNRQ
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgctattggctcaggctgctcgagaccgcttattgcgcccactggatgtgcag
ttttcacgaatgattgccggcgatgatgacccgcggttacaactggccgcagcgatcctt
agtgcagaagtaggggccggtcatgtttgcctgccattacgctatttacagccagaactg
ctattcggtgggcggcaacccgatttatcactggcgctatggcaggcggcgggctcgcca
gataaagcacagtggctacaggcattacaaaacgccccagtagtcagtgatggctctcaa
ccaacaccattagtgctacagcaggaacgtttatatctgcaacgaatgtggcagtacgaa
ggagatgtcgtccaatttattgccagtgactctgtttttataaacagagatagtgatttt
atgaccagtaaaggtattgccacttctgttgatgaatcgctattacgggagacgctagac
gctttgtttggttatgctggtagtgaggttgattggcaaaaagtggcggcagcggttgcg
gctacccgtagaatttcagttatttccggcgggccgggcacggggaaaaccaccacagta
gccaaacttttgacagcattgatacggattagtcaggggcaacgtttacgtattcaactt
gcggccccaaccggtaaagccgctgcacgccttactgaatcactgggcaaagcgattcgg
caattctctcttactgatgatgaacgtaaattattccctgatcaggcttcgaccttgcac
cgtttactgggtgttcagcccaatagccagcgcctgcgttaccaccgtggtaatccatta
aatcttgatgtactggtcgttgatgaagcatcaatggttgatttacctatgatggcgcgc
ttaattgcggcattacctgccaaggccaaggtgatattccttggtgaccgtgaccaactg
gcctcggttgaggcgggggcggttctgggggatatctgccgttttgccgaattaggttac
agcgagcaacgggcacagcaattaactcagttaacgggctatttattaactaataatgca
ttaaccagcaatgtactagccagcaatgtactaaccaataaggcattagccaataaagcg
cagccagatgaaacctattctgattcagcgaatgtacgcgatagcctgtgtttactgcgt
aaaagttaccgcttcgatgaaaagtcagggattgggcagcttgctctggccgttaatgca
ggggagtatcggcaggctttatccgtattaaacagtgcgtattctgatgttgaacgcttc
ccgctggccgatgaggaagattatcaggtactgctagaggcttgtgctgtggggtatcag
cattacctcgaacgggtggctgcgttagcccctgcggcagaggtattggcagcatttggc
cgctaccaactgctgtgtgcattacgttccgggccattcggtgtcagtggcttaaacgaa
cgcattgaacaggttttacatcgtaaaggattcattatccgtccatcagggccttctggc
cgttggtatgttgggcggccagtgatgatagaacttaatgatagcgcacttggcttattc
aacggggatattggtattgccttacatgataatgaaggcgagctacgggtatattttcaa
ttgcccgatggcaatataaagtcagtacaacctagtcgccttcccagccatgaaaccgct
tatgctatgacggttcataaatcgcagggttcagagtttgaacacacagcattggtatta
cctaacacgttcatgcccgtgttaactcgtgaattggtctataccgccattacccgcgcc
cgtcagcatctgacgctttattgcagcgatgccgtgctaagtcatgccatacgtacaccg
actctccggctgagtgggctagttgatcgcttgaatacattaaatcgccaataa
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