Yersinia pestis Harbin 35 (biovar Medievalis): YPC_0386
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Entry
YPC_0386 CDS
T01874
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
yph
Yersinia pestis Harbin 35 (biovar Medievalis)
Pathway
yph00300
Lysine biosynthesis
yph00470
D-Amino acid metabolism
yph01100
Metabolic pathways
yph01110
Biosynthesis of secondary metabolites
yph01120
Microbial metabolism in diverse environments
yph01230
Biosynthesis of amino acids
Module
yph_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
yph00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
YPC_0386 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
YPC_0386 (dapF)
Enzymes [BR:
yph01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
YPC_0386 (dapF)
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Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
CntK_N
Plk4_PB1
Motif
Other DBs
NCBI-ProteinID:
ADV97128
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Position
363620..364444
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AA seq
274 aa
AA seq
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MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY
RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMGE
PDFEPQTVPFRAAKAEKTYILRAAEHTVLCGVVSMGNPHCVMQVDDVSVANVALLGPVLE
NHERFPERANIGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGVVQDLLNENVHV
ELPGGSLHIRWQGPGHPLYMTGPATHVYDGFIHL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctccaaaatgcacggtcttggcaacgactttatggttgttgatgcagtgact
caaaatgtttacttttcgccggaattgatccgccgattagcagaccggcacacgggtgtg
ggctttgatcagatgctggtagttgagccgccctacgaccccgagctggattttcactac
cgtatttttaatgccgatgggagtgaagtctcccagtgtggtaatggcgcacgctgcttt
gcccgttttgttcgtttgaaagggctgaccaataagcgcgagatcagcgtcagtacgcaa
actggccgtatgatcctaagcgtgacagaagatgaacaggtttgcgtcaatatgggcgag
cctgattttgaaccgcaaactgtcccttttcgcgccgccaaagcggagaaaacctatatt
ttacgcgccgcagagcatacggtgctgtgtggcgtggtgtcgatgggcaacccccactgt
gtgatgcaggtcgatgatgtttcggttgccaacgtggcgttgctcggtccagtattggaa
aaccacgagcgtttccctgagcgggcaaatatcggctttatgcaggtcgtcagtcgcgac
cacattcgtttacgggtgtatgagcgtggggccggtgaaacacaagcctgtggcagtggt
gcatgtgctgcggtggccgtcggggtggtgcaagacttattgaacgaaaatgtgcatgtc
gaattgccgggcggcagtttacacatccgttggcaggggccaggccatccgttgtatatg
accgggcctgccacccatgtctatgacggatttattcatttatga
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