Yersinia pestis Harbin 35 (biovar Medievalis): YPC_3105
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Entry
YPC_3105 CDS
T01874
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
yph
Yersinia pestis Harbin 35 (biovar Medievalis)
Pathway
yph00260
Glycine, serine and threonine metabolism
yph00460
Cyanoamino acid metabolism
yph00630
Glyoxylate and dicarboxylate metabolism
yph00670
One carbon pool by folate
yph00680
Methane metabolism
yph01100
Metabolic pathways
yph01110
Biosynthesis of secondary metabolites
yph01120
Microbial metabolism in diverse environments
yph01200
Carbon metabolism
yph01230
Biosynthesis of amino acids
yph01240
Biosynthesis of cofactors
yph04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
yph00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
YPC_3105 (glyA)
09102 Energy metabolism
00680 Methane metabolism
YPC_3105 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
YPC_3105 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
YPC_3105 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
YPC_3105 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
YPC_3105 (glyA)
Enzymes [BR:
yph01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
YPC_3105 (glyA)
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Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
ADV99622
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Position
complement(2999435..3000688)
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AA seq
417 aa
AA seq
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MLKREMNIADYDADLWRAMEQEVVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP
GKRYYGGCEYVDVVEQLAIDRAKALFGADYANVQPHSGSQANVAVYSALLKPGDTVLGMN
LAHGGHLTHGSPVNFSGKLYNIVPYGIDESGQIDYEDLARQAEIHKPKMIIGGFSAYSGI
VDWAKMREIADSIDAWFFVDMAHVAGLVAAGVYPNPVPHAHIVTTTTHKTLAGPRGGLIL
AKGGDEDLYKKLNSSVFPGNQGGPLMHVIAGKAVALKEAMEPEFKIYQQQVAKNAKAMVA
VFLERGYKVVSGGTDNHLFLLDLVDKDITGKDADAALGRANITVNKNSVPNDPKSPFVTS
GVRIGSPAITRRGFKEAESRELAGWMCDVLDNINDEATIERVKQKVLAICARLPVYA
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagcgtgaaatgaacattgccgattacgatgcagatctgtggcgtgcaatggag
caagaagtcgtgcgtcaggaagaacacatcgaactgattgcgtctgagaactacaccagc
ccgcgtgttatgcaagcgcagggatctcagttaacgaacaaatatgctgaaggctatcca
ggcaagcgttattacggtggctgtgaatatgttgatgttgttgaacaattggcaatcgat
cgcgctaaagcattatttggtgctgattacgcaaacgttcaacctcattctggttcgcaa
gctaacgttgctgtttactccgcgctgctgaaacccggtgacaccgtattggggatgaat
ctggcacacggcggtcacttgacgcatggttcaccagtgaacttctccggcaaactctac
aacatcgtcccttatggtattgatgagtcgggtcaaattgattatgaagatctggcacgt
caggcagaaatacataaacccaaaatgattatcggtggcttctccgcctattctggtatc
gttgattgggcaaaaatgcgtgaaattgccgacagcattgacgcatggttctttgttgat
atggctcatgttgctggtctggttgctgcgggggtttatcctaacccggttccacatgcc
cacatcgttaccaccacgacgcacaagactctggctggcccacgtggcggtttgattctg
gcgaaagggggcgatgaagacttgtacaaaaaactgaactcttctgttttccctggtaac
cagggtggcccattgatgcatgttatcgcaggtaaagcggtcgcgctgaaagaagcaatg
gaacctgagtttaaaatttaccaacagcaagtggctaaaaatgcgaaagccatggtggcg
gtgttcttggagcgcggttacaaagtggtttctggtggtacggataaccacctgttcttg
ctagatttggtggataaagacatcaccggtaaagacgctgatgcggctttaggccgtgcg
aatatcaccgtgaacaaaaacagcgtacctaacgatccgaagagcccgtttgtgacatct
ggtgtgcgtattggtagcccagcgatcacccgccgtggcttcaaagaagcggaatcccgt
gaattggctggctggatgtgtgatgtgttagataacatcaacgatgaagcgaccattgag
cgtgtgaaacagaaagttctggctatctgcgctcgtttaccggtttacgcataa
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