Yersinia pestis Harbin 35 (biovar Medievalis): YPC_3403
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Entry
YPC_3403 CDS
T01874
Symbol
dnaX
Name
(GenBank) Holliday junction DNA helicase RuvB
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
yph
Yersinia pestis Harbin 35 (biovar Medievalis)
Pathway
yph03030
DNA replication
yph03430
Mismatch repair
yph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPC_3403 (dnaX)
03430 Mismatch repair
YPC_3403 (dnaX)
03440 Homologous recombination
YPC_3403 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yph03032
]
YPC_3403 (dnaX)
03400 DNA repair and recombination proteins [BR:
yph03400
]
YPC_3403 (dnaX)
Enzymes [BR:
yph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YPC_3403 (dnaX)
DNA replication proteins [BR:
yph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YPC_3403 (dnaX)
DNA repair and recombination proteins [BR:
yph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YPC_3403 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_tau_5
DNA_pol3_delta2
DNA_pol3_tau_4
DNA_pol3_gamma3
DNAX_ATPase_lid
AAA
AAA_22
AAA_5
RuvB_N
AAA_2
AAA_18
AAA_30
AAA_assoc_2
AAA_14
ResIII
AAA_16
PIF1
AAA_7
TsaE
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ADV99879
LinkDB
All DBs
Position
complement(3272544..3274520)
Genome browser
AA seq
658 aa
AA seq
DB search
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK
GLNCETGITATPCGTCANCQEIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRF
KVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDV
EQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSLTDQAVSMGQGQVTTVTVSQM
LGTLDDEQPLAIIEALVSADGARVMAQIEQAASRGVDWENLLVESLSLLHKIAMVQLLPS
MLDNHYAAIEPRLRELARTLPPADIQLYYQTLLVGRKELAYAPDRRMGVEMTLLRALAFH
PKAIIAEPQIAHVAAPSAIADNAVPTSQGGQHRQEPASVPPSSHQEAPPLGAVASSVQLP
ESTAQLLQARTQLLRQSGTTTTKKNEPAAPGKARPANSALERLASVTERSQQRLAAKTTE
EKKPAKKEAYRWTAKNQPEVAAEPIATPKALRSALEHEKTPELSAKLAEEAIARDPWAAE
VNKLQLPKLVQQLALNAFKQEIEPGNICLHLRSAQRHLNSASAQKALSDALSELHGNAVT
LSVIEDDNPAERTPLEWRQAIYEEKLAQARQSIIADNNIQTLRRFFDAELDEDSIRPI
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgagctatcaggtccttgcccgtaagtggcgccctcaaacgttcgccgacgtcgttggt
caggaacatgtcctgaccgcgctggctaatggcctttcattagggcgaattcatcacgcc
tatttattttcaggtactcgcggtgtgggtaaaacctcgatagccagattgctggctaaa
ggcctcaactgcgaaaccggtattactgcgaccccttgcggtacctgcgccaattgccag
gagattgagcaggggcgttttgttgatctgatcgagatagacgccgcctcccggactaag
gttgaggacacccgagagctgttggataatgtccaatatgcccctgcccgtggtcgcttc
aaggtctatttgatcgatgaagtgcatatgctatcgcggcacagtttcaacgcgttgctg
aaaacacttgaagagccgcctgcacatgtgaaatttctgttggcgaccactgatccacaa
aagttacctgttacgatcctttcccgatgtttgcaattccacctaaaagcattggatgtt
gagcagatccgtgcacaacttgaaaaagtgttgctggctgaacaaatcacgagtgatgcc
agagccttgcaattactggcccgagcggctgatggcagcatgcgagatgcgctaagctta
accgatcaggctgtatcaatggggcaagggcaggtcacgacagtaacagttagccaaatg
ctgggaacgctggatgacgaacagcctcttgccattattgaggcgttggtcagtgctgat
ggtgcccgggttatggctcagatagaacaggcggcatcgcggggtgtcgactgggaaaac
ctgttggtggaaagcttaagcctgctgcacaaaattgcgatggtacagttgctgccttcg
atgctggataaccactatgcagctattgaaccccgtttacgggaactggcccgcacatta
ccgcctgctgatattcagctgtattatcaaaccttgctggtaggccgcaaagaactggct
tatgcgccggatcgccgtatgggggttgaaatgaccttattacgcgcgctggcttttcat
cctaaagccatcattgcggagccccaaatagcgcatgttgccgcgccatctgcaatagcc
gataacgctgtgcccacctctcagggggggcaacataggcaggaacccgcatcagtaccg
ccgagttcccatcaagaggctccgccgttaggtgctgtagcgtccagcgtccaacttccg
gaatcgacagcgcaattgcttcaggcgcgtacgcagttactgcgacagtcggggacgacc
acaacaaaaaagaatgagccggcggcgccaggaaaagcgcggccggcaaactcagcactg
gagcgtttagcttcggtgactgagcgtagccagcagcgcctggcagccaaaacaacggaa
gagaagaaaccagcgaaaaaagaagcttatcgctggaccgcgaaaaatcaacctgaggta
gcggctgaacctatcgctacgcctaaagcgttgcgttctgcgctagaacatgaaaaaaca
ccagagctttccgctaaattggctgaggaggcgatcgcccgtgatccttgggctgcagag
gtcaataagttacagctccctaaattagtccagcagcttgcactgaatgcatttaaacaa
gaaatagaaccgggtaatatttgcctgcatctgcgttctgctcaacgtcatttgaattca
gcgtcagcacaaaaagcgctgagtgatgcattgagtgaattacacggtaacgcggtgaca
ctgagcgttattgaagatgacaatccggcggaacgtaccccgctggaatggcggcaggcc
atctatgaagaaaagctggcacaagcacgtcagtcaattattgcggataataatattcag
acactgcgtcgattcttcgatgccgagctggatgaagacagtatccgaccaatttaa
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