Yersinia pestis Harbin 35 (biovar Medievalis): YPC_3438
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Entry
YPC_3438 CDS
T01874
Symbol
hupB
Name
(GenBank) HU, DNA-binding transcriptional regulator, beta subunit
KO
K03530
DNA-binding protein HU-beta
Organism
yph
Yersinia pestis Harbin 35 (biovar Medievalis)
Brite
KEGG Orthology (KO) [BR:
yph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yph03032
]
YPC_3438 (hupB)
03036 Chromosome and associated proteins [BR:
yph03036
]
YPC_3438 (hupB)
03400 DNA repair and recombination proteins [BR:
yph03400
]
YPC_3438 (hupB)
DNA replication proteins [BR:
yph03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
YPC_3438 (hupB)
Chromosome and associated proteins [BR:
yph03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
YPC_3438 (hupB)
DNA repair and recombination proteins [BR:
yph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
YPC_3438 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
ADV99911
LinkDB
All DBs
Position
complement(3307675..3307947)
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AA seq
90 aa
AA seq
DB search
MNKSQLIDKIAAGADISKAAAGRALDAIITSVTESLKEGDDVALVGFGTFAVRERSARTG
RNPQTGKEISIPAAKVPGFRAGKGLKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaataagtcacaactgatagacaaaattgccgcaggtgctgatatttctaaagcggcc
gctgggcgtgcgttagatgcaattattacttctgttactgaatccttgaaagaaggggat
gatgtggctctggttggttttggtacttttgcagtacgtgagcgttctgcacgtactggc
cgtaacccgcagacaggtaaagaaattagtattccagccgctaaagtaccgggttttcgt
gccggtaaaggcctgaaagatgcagtaaactga
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