Yersinia pestis Harbin 35 (biovar Medievalis): YPC_3832
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Entry
YPC_3832 CDS
T01874
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
yph
Yersinia pestis Harbin 35 (biovar Medievalis)
Pathway
yph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YPC_3832 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yph03019
]
YPC_3832 (pnp)
03016 Transfer RNA biogenesis [BR:
yph03016
]
YPC_3832 (pnp)
Enzymes [BR:
yph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
YPC_3832 (pnp)
Messenger RNA biogenesis [BR:
yph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YPC_3832 (pnp)
Transfer RNA biogenesis [BR:
yph03016
]
Prokaryotic type
tRNA degradation factors
YPC_3832 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
KH_2
OB_RRP5_4th
aRib
UPF0181
Spt6_S1
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ADW00268
LinkDB
All DBs
Position
complement(3688824..3690941)
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AA seq
705 aa
AA seq
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MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV
NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA
GTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNE
ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDDTLDAAEIQDILASV
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASE
FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT
DGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQDVPVKVMEVDRQGRIRLSIKEATTPDAEAPEAAAE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
ttgctgactccgattattcgtaaattccagtatggtcaacataccgtaactatcgaaact
ggtatgatggctcgccaggccactgcagccgtaatggtaagcatggacgacactgcagta
ttcgtgactgttgttggtcaaaagaaagccaaaccaggccagagtttcttccctctgacg
gttaactatcaggagcgtacttacgctgctggccgtatcccaggtagcttcttccgtcgt
gaaggccgcccaagtgaaggcgaaacactgacttcacgtctgatcgaccgcccaattcgc
ccactgttcccagacagcttcctgaacgaagttcaagtgattgcaaccgtcgtttcggtt
aacccacaaattaacccagacatcgtggcactgattggtgcatctgcggcactgagcttg
tcaggcattccatttaacggcccaatcggtgctgctcgcgttggttttatcaacgaccag
tatgtgctgaacccaaccactgacgagctgaaagagagccgtttggatctggttgttgcc
ggtactgcgggtgcagtgctgatggttgaatcagaagccgatattctgtccgaagagcaa
atgttgggcgcggtcgtcttcggccacgaacaacagcaagttgtgattgaaaatattaac
gctttggttgctgaagctggcaaacctaagtgggattggcaggcagagcctgtcaacgaa
gcactgcatgcgcgtgttgctgaactggccgaagcgcgtctgggcgatgcataccgtatc
actgaaaaacaagaacgttatacgcaagttgatgctatcaaagctgacgtgaccgaagcg
ctattagcgcaggacgacacattagatgccgctgaaattcaggatatcctggccagcgtt
gagaaaaatgttgtgcgtagccgtgtgctgcgtggtgagccacgtatcgatggtcgcgaa
aaagacatgatccgtggtttggatgtacgtactggcatcttgccacgtactcatggttct
gccttgttcacccgcggtgaaactcaggcgttggttaccgctacgctgggtacggcacgt
gacgcacaaaacattgatgagttgatgggtgagcgcacagattcattcctgttacactat
aatttccctccgtattgtgtaggcgaaacagggatggttggctcacctaagcgtcgtgag
attggccatggccgccttgcgaaacgtggtgttctggctgtgatgccaagtgcgagcgag
ttcccttacactattcgtgtggtttctgaaatcaccgagtctaatggttcttcctcaatg
gcttctgtttgtggtgcttctctggctctgatggatgcgggcgtgccaattaaagccgct
gttgctggtattgcaatgggcctggtaaaagagggtgataactttgtcgttctgtctgac
attctgggtgacgaagatcacttgggcgacatggactttaaagtagccggtagccgtgac
ggtgtgaccgcactgcaaatggacattaaaattgaaggtattacccgcgaaattatgcag
gtagctctgaatcaggctaagggtgcacgtttgcacattctgggcgtgatggaacaggct
atcagcacaccacgtggcgatatctctgagtttgctccacgtatctacaccatgaagatc
aaccctgagaaaatcaaggatgtgatcggtaaaggtggttcggtgatccgtgcgctgact
gatgaaactggcaccacgattgaaatcgaagatgatggtaccattaagattgcagcaact
gatggcgataaagcaaaacacgctatccgtcgtatcgaagagattactgctgaaatcgaa
gtgggccgtatttacgcaggtaaagtcacccgtatcgttgatttcggtgcatttgttgct
atcggtggcggtaaagaaggtctggtacatatttctcaaatcgctgataagcgtgtagag
aaagtgacagactacctgcagatgggtcaagatgtgccagttaaagtaatggaagttgat
cgtcagggccgtatccgcctgagcatcaaagaagccactactcctgacgcagaagcacca
gaagcagcagcagagtaa
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