KEGG   Yersinia pestis Harbin 35 (biovar Medievalis): YPC_4018
Entry
YPC_4018          CDS       T01874                                 
Name
(GenBank) ClpB protein
  KO
K11907  type VI secretion system protein VasG
Organism
yph  Yersinia pestis Harbin 35 (biovar Medievalis)
Pathway
yph03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:yph00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    YPC_4018
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:yph02044]
    YPC_4018
Secretion system [BR:yph02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   YPC_4018
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 AAA Clp_N AAA_5 AAA_16 AAA_22 NBD_SMAX1 Zeta_toxin Sigma54_activat AAA_7 NACHT nSTAND3 ResIII ClpB_D2-small AAA_30 SLFN-g3_helicase Torsin T2SSE ATPase_2 DUF815 Lipase_chap DUF87 AAA_25 HR1 Muted Vps53_N FlxA
Other DBs
NCBI-ProteinID: ADW00449
LinkDB
Position
3877333..3879936
AA seq 867 aa
MGAITVYQRERLFNRLGTFAYKTFVEATRLCRSYRHEYVELEHWLKILMDQQRGDIPALL
THYGLSQTVISTQLDRIIQHMPVTKASVQDLSSRLESVVEGGLVLSQLMASPSPIRTSHI
LLALLQDTQHQRWLYRLCDEFKKLPVPQVAEEYEGLLVNSIEQTSEVQRGDALVTETDSS
SSKEAHAALNKWCNDLTQQARDGEIDPVIGREAELRQVIDILLRRRQNNPILVGEAGVGK
TAVVEALARKLASGDVPPLLQGARLLSLDLGRMQAGASMRGEFESRLKSLIDGISQSDTP
VILFCDEAHTLVGAGGQAGTGDAVNLLKPMLARGALRMIAATTWSEYKQFIEPDAALTRR
FQRVLIGEPNESTAVDMLRAIAPHFAQHHNVTIRDGAIHAAVRLSLRNLPSRQLPDKAIS
LLDTACARVALSQYAQPQAIEQLSAQLDVLKTEHQYLVREKQLGEAVDQRLDDVQTQIQA
FEHELTALQSRHLHEQQLVREVLPEGEGSGMMTENARWGELMALQEASPLVYPWVDEQSI
AAVLSDWTGIPSGKMLQDDIECVLNLEQRLGDHIFGQRNAIKEISQAIRIARAGIQSQER
PLGIFLLAGSTGTGKTETANVLVETLYGGAHNLITFNMSEFQEAHTLSTLKGAPPGYVGY
GKGGKLTEAVRRKPYSVILLDEFDKAHADIQDAFYQVFDKGWMEDAEGRRVSFRQCFILL
TCNQGAEEIEQAYLTANDIKPGALKPLVYDALLRRFAPALLARVNIIPYIPLDQDALAQI
ASHHLARLQTRLWDEIGATLVTEGDIPGWIASRVCSHPNHGRAVEELLRQTLLPAVGNEV
LKRRHEAEPLREIRLIVEETELSIEFA
NT seq 2604 nt   +upstreamnt  +downstreamnt
atgggagcgataacggtgtatcaacgcgaacgtctttttaatcgattgggcacttttgcc
tataaaacttttgttgaagccacccgtctttgccgcagttatcggcatgagtatgtggag
cttgaacattggttaaaaattctcatggatcaacagcgtggggatattcctgctctactg
acgcattacggactgagccagacggttatctccacgcaattggatcgcattattcagcat
atgcccgtcaccaaagcatcggtgcaggatttatcatcacgcttggagtccgtggtcgaa
ggcggattggtgttgagccaattgatggcgtcaccttctcctatccgtacctcgcatatt
ttactggcactattacaggatacccagcatcagcgctggttataccgcctgtgcgatgaa
ttcaaaaagctgccggtcccacaggttgcagaggaatatgaaggcctattagttaactcc
attgaacagaccagcgaggttcaaagaggcgacgcattagtgacggaaacggacagcagc
tcatcaaaagaagcgcatgcggcattgaacaaatggtgtaacgaccttacccagcaagcc
cgtgacggtgagattgaccccgttattggtcgtgaagcagaactgcgtcaagtgattgat
attttactccgtcgccgtcagaacaaccctattttggttggggaagcgggggtcggtaaa
acggcggtggttgaagcgctagcgcgaaaactggccagtggcgatgtccctccgctgttg
caaggggcgcgtctgctttctctggatttggggaggatgcaagccggtgccagtatgcgc
ggtgaatttgaatcacgtcttaaatccctgatcgatggcatcagccaatcggataccccg
gttattctgttttgtgatgaagcccatacgttggtgggggcaggcgggcaggcgggcacg
ggggatgcggtcaacctgcttaaaccgatgttggcgaggggcgcattgcgcatgatcgcc
gccaccacctggtcagagtataaacagtttattgaacctgacgccgcgctgacccggcgt
ttccagcgggtattgattggcgagccaaacgaatctaccgccgtcgatatgctacgggcg
attgcgccacattttgctcaacatcataacgtcactatccgcgacggtgccattcacgcg
gcggtgcgcctgtcattacgcaacctgccttcccggcagttgcccgataaagccatcagt
ctgctcgacaccgcttgcgcgcgggtcgcgctcagccaatatgcccaaccacaggcgatt
gaacagttatcggcccaactggatgtgctcaaaaccgagcatcaatatctggtacgggag
aagcaactgggcgaagcggttgatcaacggctagatgacgttcagacacagatccaggcg
tttgaacatgaactaaccgccttgcaaagccgccatctgcatgagcaacagctagtgagg
gaggtcctgccggagggagaaggcagtggcatgatgacggaaaatgcccgctggggtgaa
ctgatggcgttacaggaagcgtcgccactggtctatccatgggttgatgagcagagcatc
gccgcggtgctttccgattggaccgggatcccgtccggcaaaatgttgcaggacgatatt
gaatgcgtcctgaatcttgaacagcgtctcggtgatcatattttcgggcaacgcaacgct
atcaaagagatttcgcaggcgatacgtattgctcgggcgggcatccagtctcaggagcgg
ccactcgggatcttcctgctggcggggtcaaccggtacgggcaaaacagaaacggccaat
gtactggtcgaaaccttgtatggcggtgctcataaccttattaccttcaatatgagtgag
ttccaagaggcgcataccttatccacgctgaaaggcgcacctccgggctatgtcggctat
ggcaagggggggaaattaaccgaagcggtaagacgcaaaccttattcggtcatcctgctt
gatgagtttgataaagctcacgccgatattcaggacgccttttatcaggtcttcgacaaa
gggtggatggaagatgccgaagggcgtcgggtcagtttccgccagtgtttcatcttactg
acctgtaatcagggcgcggaagagatcgaacaggcttacctcaccgccaacgatatcaaa
cccggtgcattaaaaccgttggtatacgacgccctgttgcgccgctttgcgccagcgctg
ttagccagggtcaatatcattccttatatcccattagatcaggacgctctggcacagatc
gcctctcatcatcttgcgcgcttacaaacgcgcctgtgggatgaaattggtgccactttg
gtgaccgagggggatatccccggctggatcgcctcacgggtttgcagccatccgaaccat
ggtcgtgcggtggaagaactcttgcgtcaaaccttacttcccgctgttggcaatgaagtg
ttgaagcgtcgccatgaggctgaaccgctgagagagatacgcctgattgttgaggagaca
gaactgagtattgagttcgcgtag

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