KEGG   Yoonia phaeophyticola: AABB29_13890
Entry
AABB29_13890      CDS       T10493                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
yphy  Yoonia phaeophyticola
Pathway
yphy02024  Quorum sensing
yphy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:yphy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AABB29_13890 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AABB29_13890 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yphy03019]
    AABB29_13890 (hfq)
   03036 Chromosome and associated proteins [BR:yphy03036]
    AABB29_13890 (hfq)
Messenger RNA biogenesis [BR:yphy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AABB29_13890 (hfq)
Chromosome and associated proteins [BR:yphy03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AABB29_13890 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: WZC47971
UniProt: A0ABZ2V0J3
LinkDB
Position
3006050..3006283
AA seq 77 aa
MAADKANLQDAFLNHVRKTKVPVTIFLVNGVKLQGVITWFDSFCVLLRRDGQSQLVYKSA
ISTIMPAQPISLYEGEE
NT seq 234 nt   +upstreamnt  +downstreamnt
atggctgccgataaagcaaatctgcaagacgcgtttctgaaccatgtccgtaaaaccaag
gtacctgtgaccattttcctcgtgaatggcgtcaaactgcagggcgtgatcacatggttc
gacagtttctgcgtgctgctgcgccgtgatgggcaatcgcaattggtctacaaaagcgcg
atttccaccatcatgcctgcgcagcccatcagcctttatgaaggtgaagagtag

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