Yoonia phaeophyticola: AABB29_16490
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Entry
AABB29_16490 CDS
T10493
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
yphy Yoonia phaeophyticola
Pathway
yphy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yphy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AABB29_16490 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yphy03021
]
AABB29_16490 (rpoD)
Transcription machinery [BR:
yphy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AABB29_16490 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
Motif
Other DBs
NCBI-ProteinID:
WZC48439
UniProt:
A0ABZ2V3C5
LinkDB
All DBs
Position
2525385..2527364
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AA seq
659 aa
AA seq
DB search
MAKDGDDRKDGDQDGDISLDMSQTAVKKMIADARERGYITYDQLNAVLPPDQVSSDQIED
VMSMLSEMGIQVTEEEESEETEEPQGGTEVATVAGSREVTLGGAEAEKLDRTDDPVRMYL
REMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLNEDILLRDVI
DLETTFGDQMGEDGEAAAVVVPTADAPAEKVEKAQELDADGNPIAKDDDDDDEDQANMSL
AAMEATLKPRVLETLEIIARDFATLSDMQDARMSATLNEDSSFSDKEEKKYQQLRSEIVE
LVNSLHLHNNRIEALIDQLYGINRRIMSIDSAMVKLADQARINRREFIDAYRGRELDPNW
LEEMSEKSGRGWQMLIERSTAKIEELRGDMAQVGQYVGVDITEFRRIVQQVQKGEKEARQ
AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW
IRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKV
RKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLTPR
EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagatggtgacgatcgtaaggatggcgaccaggatggcgacatcagcctggat
atgagccaaaccgcggtcaaaaagatgatcgccgacgcgcgcgagcgtggctatatcacc
tacgatcaactgaacgccgtgctgccgcctgatcaggtgtcgtctgatcagattgaagat
gtgatgtcgatgctgtccgaaatgggcatccaggtcaccgaagaagaagaaagcgaagaa
acagaagaaccccagggcggcaccgaggtggcgaccgtcgctggctcgcgcgaggtgacg
ctgggcggggccgaggctgaaaagcttgaccgcaccgatgacccggttcgcatgtatctg
cgcgaaatgggcagtgtcgaactgctgagccgtgaaggcgaaatcgcgattgccaaacgg
attgaggccggtcgcaacacgatgatcctggggctttgtgaaagcccgctgaccttccag
gcgatcacgatctggcgcgatgaacttctgaacgaagacatcctgctacgcgatgtgatc
gaccttgaaaccacgttcggcgaccaaatgggcgaggatggcgaagcggctgctgtcgtt
gtgccgactgccgatgcgcctgccgaaaaggtcgaaaaggcgcaagagctggacgccgat
ggtaacccgattgccaaagatgacgacgacgatgatgaggatcaggccaacatgtcgctg
gccgcgatggaggccacgctgaagccgcgtgtgctggaaacgcttgaaatcatcgcccgc
gactttgcgaccctctctgatatgcaagacgcccggatgtctgcgaccttgaatgaggat
tcctcattctcggacaaggaagagaagaaataccagcagctgcgctctgaaatcgtggaa
ttggtgaactcgctccatttacacaacaaccggatcgaagcgctgattgaccagctttac
gggatcaaccgccggatcatgtccatcgatagcgcgatggtcaaactggccgaccaggcc
cgcatcaaccgccgcgaatttatcgatgcctatcgcgggcgcgagcttgatcccaattgg
cttgaggaaatgtccgaaaagtccgggcgcggttggcagatgctgatcgaacgctcaact
gccaagatcgaggaactgcgcggcgacatggcccaggttggccaatatgtcggggtggat
atcaccgaattccgccgcatcgtccagcaggtccagaagggtgaaaaagaggcacgtcag
gccaagaaagaaatggtcgaagcgaacctgcgtcttgtgatctcgattgccaagaaatac
acgaaccgtggcctgcaattcctagatttgatccaggaagggaatatcggcctgatgaag
gccgtcgataagttcgaatatcgccgcggctacaagttcagcacctatgcgacatggtgg
atccgtcaggcgatcacccggtcgattgctgatcaggcccgcacgatccgtatcccggtc
catatgattgagacgatcaacaaactggtccggaccggtcgccagatgctgcatgaaatc
ggccgcgaacccacgccagaggaactcgcagaaaaactgcaaatgcctttggaaaaggtc
cgcaaggtgatgaagatcgccaaggaaccgatttcactggaaacgccaattggcgacgaa
gaagacagccaactcggcgatttcatcgaagacaagaacgcgatcctgccgctggattcg
gctattcaggaaaatctgaaagagacgacaacgcgcgttctggccagtctgaccccacgc
gaagaacgcgtgctgcggatgcgctttgggatcgggatgaacaccgaccatactttggaa
gaagtggggcagcagttcagcgtgacgcgcgaacggattcgccagatcgaagccaaagcg
ctgcgcaagctcaagcacccaagccggtcacgcaagctgcgcagcttccttgatcagtaa
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