Yoonia phaeophyticola: AABB29_20305
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Entry
AABB29_20305 CDS
T10493
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
yphy Yoonia phaeophyticola
Pathway
yphy03420
Nucleotide excision repair
yphy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AABB29_20305
03430 Mismatch repair
AABB29_20305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yphy03400
]
AABB29_20305
Enzymes [BR:
yphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AABB29_20305
DNA repair and recombination proteins [BR:
yphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AABB29_20305
MMR (mismatch excision repair)
Other MMR factors
AABB29_20305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
AAA_19
UvrD_C
UvrD_C_2
AAA_30
Cas_Cas4
AAA_11
Meth_synt_1
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
WZC51039
LinkDB
All DBs
Position
pBS5-3-1:47122..50007
Genome browser
AA seq
961 aa
AA seq
DB search
MHSSANLSQKKAIAHFDGPVLIIAGPGSGKTYTLVERVVALIEAGKATAETLLVVTFTEK
AAQELTTRISNRLLSAGLSFNVNEMYIGTFHSICLRILKDHSEFTRLKRSFNLLDQFDQQ
YFLYQRLKEFKAIDGITELIGEDRSGRWYQSTQLLKWLNKVTEETLDIKALEDSGQASLQ
ALAECFATYQHLLEEANALDFSGIQFEALRLLKDHPGVLESLKSKFSHLMVDEYQDTNTI
QEQILFHLAGDTKNLCVVGDDDQGLYRFRGATIRNILEYPSNFAKGECEQVSLTVNYRSD
PKIIDFYNSWIADEEWSDKDAQYRYDKVIEPRPDDFADVSSVLKITQTDNNSFQDEVYEF
LRHLEASGELTDWNQVAFLFRSVKNDKVLALARHLESNGILVYSPRSNLYFEREEIRLMI
GALIFLFPQFADVRQERADLEMRVWEYYDEQCFKFFVQELRKPENKRLLEWARPLAKRHL
NLTADADYAFSGLFYQLLQFPLFSRFLEEDQLTGVDKGRAARNLATFSQLLVKFEYLHYI
TVLNPRFLDQNIRDLFNRYLKFLHEGGINEYEDDSEYAPSGCVSFLTIHQSKGLEFPIVI
CGSLEATPRKQWTDIDELLEPFLNKPPFEPMERTKFFDFRRLYYTAFSRAQNLLVLATEV
KEGRGRSPSRYFDDCFHDLPHWRDPKFVVENFDFEQVKDVNLKREYSFTSHITLFENCAE
QYRFFKELEFQPIRAGAQLFGTLVHQTIEDVHKAVLRGEPHLVTEDQIKGWFDTNYHYLS
KRERQYLAPPSLRAAHGHVVRYVDRERKNFDRLKEAEVDISLVKDSYILKGSVDLIRGEN
GTVELIDFKSERKPDMEKDRSRLHQYQRQLEVYAHLVEERTGEKVSKTHLYYTGEQDSNP
FISFEKDGKAIGKTIASFDAVVDRIEGRDYAIRERPAKLCENCDMRAYCDMKNWNFKAGG
A
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
ttgcactcatctgccaatcttagccagaaaaaggctatcgcgcactttgatggtccagtg
ttgattatcgcaggtcctggctcaggtaaaacctatacacttgttgagcgcgtcgtggcg
ttgatagaggccgggaaggctacagccgaaacccttctagtggtaactttcacagaaaaa
gcggcacaagagctaacaacccgaatttcaaaccgattactgtccgctgggcttagtttc
aacgtcaatgagatgtacattggtacttttcattctatatgccttcgcatcttaaaggat
catagcgagttcacgaggttaaagcgcagcttcaatcttctcgaccaatttgatcagcaa
tatttcctctaccaacgcctaaaagagttcaaagccatcgatgggataaccgaattaatc
ggcgaagaccggtctgggcgttggtatcaatcgacgcagctcttaaagtggttgaacaaa
gtcacagaagagaccctggacatcaaggcgctcgaagactcagggcaagcgtcacttcag
gcgcttgccgagtgtttcgcgacctatcagcacctattggaagaggcgaatgcgctcgat
ttttcgggcattcagttcgaggctttgcggttgttgaaggatcaccccggtgtcttagag
agcctgaaatccaagttctcccaccttatggtcgatgagtaccaggacacgaacacgatc
caggagcagatacttttccacttggccggtgacacaaaaaacctgtgcgtcgtgggcgac
gatgatcagggtttgtaccgatttcgcggcgcgactattcggaatattcttgagtacccc
agcaattttgcgaagggcgaatgtgaacaagtatcccttacggtaaactatcgctctgac
ccgaaaattatcgacttctacaattcatggatcgctgatgaagaatggagcgataaggac
gcgcaataccggtatgacaaggttatcgaaccgcgccccgatgattttgcggacgtcagc
tcggttctgaaaatcacccaaactgacaacaacagctttcaggatgaagtctacgagttc
ctgcgccatctcgaggcgtctggcgaactgacagactggaaccaggtcgcatttctgttc
cggtctgtgaaaaacgacaaagtgcttgcgcttgcccggcacctcgagtccaatggcatc
ctggtctattcgccgcgctccaacctctattttgagcgcgaagagattaggttgatgatc
ggtgcgctgatcttcctgttcccgcagtttgcagatgttcgacaggagcgcgcagacctc
gagatgcgcgtttgggagtactatgacgagcagtgtttcaagtttttcgttcaggaactg
cgcaaaccagagaataagcggttgctggaatgggcgcggccgttggccaaacggcatctc
aacctgaccgcagatgctgactacgcgttttccgggctgttctaccagctcctccagttc
cctctcttcagcaggtttctggaagaagaccaactgaccggcgttgataaaggacgcgcg
gcgcgcaaccttgcgacgttttcccagctcttagtgaagttcgagtatcttcactacatc
acggttctgaatccgcgtttcttggatcagaacatccgggatctgttcaatcgctacctc
aaatttttgcacgagggcgggatcaacgaatacgaggatgacagcgaatacgcgcccagt
gggtgcgtctccttcctgacaatccaccagtccaagggactcgagttcccgattgtgatt
tgcggatcgctcgaggcgacgccgcgcaagcagtggacggacatcgatgaactgctcgag
cccttcctgaacaagccaccgttcgaaccgatggagcgaaccaagtttttcgatttccgg
cggctctactacaccgccttctcgcgggcacagaaccttttggtgctggccacggaagtc
aaggaggggcgtgggcggtcaccgtcgcggtacttcgatgactgcttccacgatctgccc
cattggcgcgatccaaaatttgtggtcgagaatttcgacttcgaacaggttaaggacgtg
aacctcaagcgggaatactccttcacctcgcacatcaccctgttcgagaactgcgccgaa
cagtaccgcttcttcaaagagctcgaattccagccgatccgggccggggcgcagctcttt
ggtacgttggtgcaccagacgattgaggacgtgcacaaggccgtcctgcggggtgagccg
catctggtcaccgaggatcagatcaaagggtggttcgacacgaactaccactacctgtcc
aagcgcgagcgccaatatctggctccgccgtcgcttagggcagcgcatggccatgttgtg
cgatatgtggaccgcgagcgtaagaatttcgaccggctgaaggaggcggaggtcgatatc
tcgttggtcaaggacagctatatcctcaagggcagtgtagacctgatcaggggcgaaaac
ggcacggtcgagctgatagacttcaagtcggaacgtaagccggacatggagaaggaccgc
agccgcctgcaccaatatcagcgtcagcttgaggtttacgcccatttggttgaggaacgg
acaggcgagaaggtcagcaagacgcatctctactataccggcgagcaggacagtaacccg
tttatctcattcgaaaaggacggtaaggctattggcaaaactatcgcatcatttgatgcc
gtcgtggaccggattgagggacgcgactatgcgatcagggaacgtcccgcaaagctgtgt
gagaactgcgatatgcgggcctattgcgatatgaagaactggaattttaaggcgggcggt
gcgtga
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