Yersinia pseudotuberculosis IP 31758 (serotype O 1b): YpsIP31758_0218
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Entry
YpsIP31758_0218 CDS
T00570
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ypi
Yersinia pseudotuberculosis IP 31758 (serotype O:1b)
Pathway
ypi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YpsIP31758_0218 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypi03019
]
YpsIP31758_0218 (recQ)
03400 DNA repair and recombination proteins [BR:
ypi03400
]
YpsIP31758_0218 (recQ)
Enzymes [BR:
ypi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YpsIP31758_0218 (recQ)
Messenger RNA biogenesis [BR:
ypi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YpsIP31758_0218 (recQ)
DNA repair and recombination proteins [BR:
ypi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YpsIP31758_0218 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ABS46563
UniProt:
A0A0U1QVM6
LinkDB
All DBs
Position
245381..247213
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AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAVQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMESFLDQLYQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIAL
TATADEATRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQPCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREMGHDKLSVYGIGREQTHEHWVSVLRQLIHLG
LLSQNIAQFSALQLTEAARPVLRAELPLQLAVPRIQSLKVRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAL
IRDHVDNNDD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaccgcagcagtgataaacagggaattactggcagtgcaggtattgcgagatact
tttggttatcagcaatttcggccagggcagcaggagatcatcaacgcgacattgtcaggc
caggattgtctggttgtgatgccaactggcggcggtaaatccttgtgttatcagatccct
gccttggtgaccgatgggctgacattggtggtttcaccgcttatctctctgatgaaagat
caggttgaccaactgttggcctatggcgtgggcgcgggttgtctaaactcatcgcagacc
cgtgaacagcaactggccgttatggatggttgccgcagtgggcagattaaattgctgtat
atcgcgccagaacggttggtgatggagagttttcttgatcaactgtatcaatggcgaccc
gccttgctggcagtggatgaggctcactgtatttcccaatggggccatgatttccgcccg
gaataccgtgctcttggtcagttaaagcagcgtttccctgatctaccggttattgcattg
accgctacggctgatgaagcgacgcgtggcgatattgtgcgcctgttgaatctggatcaa
cctctgattcagatcagtagttttgatcgcccgaatatccgctataccttagttgagaag
tttaaacctctcgatcaactgtggcgttttgtacaagaccagcgcggcaagagtggcatt
atttactgtaatagccgagcgaaagtggaagatacgaccgcccgtttgcaaagccgtggc
ttgagtgttgccgcctatcacgccgggctggataacgagcgccgtgctcaggtgcaagag
gctttccagcgcgatgacttacaagtggtggtcgccaccgtagcgtttggaatggggatt
aacaaaccgaacgtccgttttgtcgtgcattttgatatcccacgcaccatcgaatcctac
tatcaggaaacggggcgcgccgggcgtgatggcttaccggctgaggccgtgttgttgtac
gatccggcagatatggcgtggttacgccgttgccttgaagagaaacctgcgggtgctcag
caagatatcgaacggcataaactcaatgcaatgggggcatttgccgaagcgcaaacctgt
cgccgtttggtgctgctcaactattttggtgaaggtaaacagcagccatgcggtaactgc
gatatctgtctggatccgccgaagcgttacgatggtctggcagatgcgcaaaaggcgctc
tcttgcgtctatcgggtagggcaacgctttggcttagggtacatcgttgaggtgctgcgt
ggggcaaataaccagcgtattcgtgagatgggccatgacaagctttcggtgtacggcatt
ggccgtgaacaaacccatgaacactgggtcagtgtcttgcgccagttgatccatttgggg
ctgctcagccagaatattgcccagttctctgccttgcaactgactgaagcggcgcgcccg
gtcttacgcgcagagctgccattacaactggcggtaccgcgtattcagagcctaaaagtg
cgtagcagtgccaatcagaaatcctatggtggcaattatgatcgcaagttgttcgctaag
ctgcgcaaactgcgtaaatcaattgctgatgaaggcaatatcccgccttatgtggtgttt
aacgatgcgaccttgctggagatggctgagcagatgccgattactgccagcgagctattg
agcgttaatggtgtcggtcagcgtaaactagaacgttttggtgcaccatttatggccctg
atccgtgatcatgtggataacaacgatgactaa
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